Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 58,706 – 58,799 |
Length | 93 |
Max. P | 0.847456 |
Location | 58,706 – 58,799 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 96.77 |
Mean single sequence MFE | -19.68 |
Consensus MFE | -17.72 |
Energy contribution | -18.28 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.44 |
Structure conservation index | 0.90 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 58706 93 + 22224390 UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUACCACAACAGUAAAAGCUGAAGUUGAAUUCGAGUCUUACUCCGAUGCU ((((((....))))))...((((....((((..((.((((.((((.(.((..((((....))))..)).).))).).)))).)))))).)))) ( -20.40) >DroSec_CAF1 36464 93 + 1 UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCAAGUCCUACUCCGAUGCU ((((((....))))))...((((....((((..((..(((..(((..(((..((((....))))..)))..)))...)))..)))))).)))) ( -19.30) >DroSim_CAF1 36292 93 + 1 UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCAAGUCCUACUCCGAUGCU ((((((....))))))...((((....((((..((..(((..(((..(((..((((....))))..)))..)))...)))..)))))).)))) ( -19.30) >DroEre_CAF1 18447 93 + 1 UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCGAGUCUUACUCUGAUGCU ((((((....))))))................(((((((.....((((((..((((....))))...(((....))))))))).))))))).. ( -20.40) >DroYak_CAF1 29466 93 + 1 UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGCUGAAUUCGAGUCUUACUCUGAUGCU ((((((....))))))................(((((((.....((((((..((((....))))....((....)).)))))).))))))).. ( -19.00) >consensus UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCGAGUCUUACUCCGAUGCU ((((((....))))))...((((....((((..((.((((..(((..(((..((((....))))..)))..)))...)))).)))))).)))) (-17.72 = -18.28 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:33 2006