Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,951,521 – 5,951,637 |
Length | 116 |
Max. P | 0.671076 |
Location | 5,951,521 – 5,951,637 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.32 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -13.66 |
Energy contribution | -13.85 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.66 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5951521 116 + 22224390 CUAUAAGUAACUGUAUAUGUAAUAUAACUGUAUAUAUGUAAAUCGCAUAUAACACAUUGUAUAUAAUCCAUCACCCUCGUCGGGGC----UAUCAUCGUUUUCGACAGCUACUAUUUAAA .....((((.((((.......((((((.(((.(((((((.....)))))))..)))))))))...........(((.....)))..----..............)))).))))....... ( -19.80) >DroSec_CAF1 38947 118 + 1 CUAUAAGUAACUGUAUAUGUAAUAUAACUUUAUAUAUGUAAAUCGCAUAUAACAC-UUGUAUAUAAUCCAUCACCCUCGUCGGGGUUAUGUAUCUUCGUUUUCGACAGCUAC-AUUUAAA ......(((.((((..................(((((((.....)))))))....-..(((((((((((..(......)...)))))))))))...........)))).)))-....... ( -21.40) >DroSim_CAF1 45099 118 + 1 CUAUAAGUAACUGUAUAUGUAAUAUAACUGUAUAUAUGUAAAUCGCAUAUAACAC-UUGUAUAUAAUCCAUCACCCUCGUCGGGGUCAUGUAUCUUCGUUUUCGACAGCUAC-AUUUAAA ......(((.((((.......((((((.(((.(((((((.....)))))))))).-))))))......(((.(((((....))))).)))..............)))).)))-....... ( -24.50) >DroYak_CAF1 41739 96 + 1 CUAUAAGUAACUGUAAAUGUAAUAUAACUGUAUAUAUGUAAAUCGCAUAUAACAC-UUGUAUAUAAUCCAUCA----------------------UCGUAUUCGACAGCUAC-AUUUAAA .............((((((((((((((.(((.(((((((.....)))))))))).-))))))...........----------------------(((....)))....)))-))))).. ( -17.10) >consensus CUAUAAGUAACUGUAUAUGUAAUAUAACUGUAUAUAUGUAAAUCGCAUAUAACAC_UUGUAUAUAAUCCAUCACCCUCGUCGGGGU____UAUCUUCGUUUUCGACAGCUAC_AUUUAAA ......(((.((((.......((((((.....(((((((.....))))))).....))))))...........(((.....)))....................)))).)))........ (-13.66 = -13.85 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:34 2006