Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,950,133 – 5,950,226 |
Length | 93 |
Max. P | 0.510958 |
Location | 5,950,133 – 5,950,226 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -25.45 |
Energy contribution | -24.80 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.19 |
Mean z-score | -1.83 |
Structure conservation index | 0.78 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5950133 93 + 22224390 CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCACUGC----UU---GUCUGUGUAGGUGUGUGUGGUGUGGAGAGUAGGGCAUAUUCAUUGUGUGUGU .......(((((..(((.((((...((((..(((.((((----..---......))))))).)))))))))))..))))).((((((.....)))))).. ( -30.80) >DroSim_CAF1 43746 100 + 1 CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCACUGCUUGCUUGGUGUCUGUGUAGGUGUGUGUGGUGUGGUGAGUAGGGCAUAUUCAUUGUGUGUGU .......(((((..(((.((((..(((((((((((.((((.....))))..)))).)))))))...)))))))..))))).((((((.....)))))).. ( -35.20) >DroYak_CAF1 40308 100 + 1 CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCAUUGCUUGCUUGGUGUCUGUGUUGGUGUGAGUGUGAUUGUGAGCAGGGUGUAUUCAUUGUGUGCGU ....((((((((..(.(((((..(((((((.((((.((((.....))))..))))..)))))))..))))).)..)))))((((....))))...))).. ( -32.20) >consensus CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCACUGCUUGCUUGGUGUCUGUGUAGGUGUGUGUGGUGUGGUGAGUAGGGCAUAUUCAUUGUGUGUGU .......(((((..(((((((...(((((((.((((.((.........))..))))))))))).)))..))))..))))).((((((.....)))))).. (-25.45 = -24.80 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:33 2006