Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,948,522 – 5,948,620 |
Length | 98 |
Max. P | 0.822004 |
Location | 5,948,522 – 5,948,620 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.23 |
Mean single sequence MFE | -31.65 |
Consensus MFE | -21.10 |
Energy contribution | -20.93 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.06 |
Mean z-score | -1.42 |
Structure conservation index | 0.67 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.822004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5948522 98 + 22224390 AUGCCGUGAAUCGCAAGCCCUCUAAUUACAUCCCUUCC-----AGGCCUACAAGAAAUGGGAGACCUUACAUGGGCGGGAGCAGCAGCUGCCCGGCCUGAACA .(((........)))......................(-----(((((..........((....))......((((((.........)))))))))))).... ( -28.40) >DroPse_CAF1 38361 90 + 1 CUGAUGUGA--------UCCUCCA-----UUCCUUUGCUUUGCAGGCCUACAAGAAGUGGGAAACACUGCAUGGCCGGGAGCUGCAGCUGCCCGGCCUCAAUA ......(((--------.......-----...........(((((.(((((.....))))).....))))).((((((((((....))).))))))))))... ( -33.70) >DroSec_CAF1 36013 103 + 1 AUGCCAUGAAUCCCAAACCCUCUAAGUUCUUUCUUUCCUAUCUAGGCCUACAAGAAAUGGGAGACCUUACAUGGGCGGGAGCAGCAGCUGCCCGGCCUGAACA ..(((......((((...........(((((.....(((....))).....)))))..((....)).....)))).((((((....))).))))))....... ( -26.90) >DroSim_CAF1 42141 103 + 1 AUGCUAUGAAUCCCAAACCCUCUAAGUUCUUCCUUUCCUUUGUAGGCCUACAAGAAAUGGGAGACCUUACAUGGGCGGGAGCAGCUGCUGCCCGGCCUGAACA ..((.............(((..((((.((((((((((..(((((....))))))))).)))))).))))...)))(((((((....))).))))))....... ( -31.90) >DroEre_CAF1 35579 98 + 1 UGUCAACGAAUCCUAAACCCUCCGAGUUCUGCCCUUUC-----AGGCCUACAAGAAGUGGGAGACCCUACAUGGGCGGGAGCAGCUGCUGCCCGGCCUGAACA .......(((..(..........)..)))......(((-----(((((........(((((....)))))..((((((.((...)).)))))))))))))).. ( -33.90) >DroPer_CAF1 37919 90 + 1 CUGAUGUGA--------UCCUCCA-----UUCCUUCGCUUUGCAGGCCUACAAGAAGUGGGAGACACUGCAUGGCCGGGAGCUGCAGCUGCCCGGCCUCAAUA .(((.((((--------.......-----.....))))..(((((.(((((.....))))).....))))).((((((((((....))).))))))))))... ( -35.10) >consensus AUGCUAUGAAUCCCAAACCCUCCAAGUUCUUCCUUUCCUUUG_AGGCCUACAAGAAAUGGGAGACCCUACAUGGGCGGGAGCAGCAGCUGCCCGGCCUGAACA ...........................................(((((..((.(.((.((....)))).).))...((((((....))).))))))))..... (-21.10 = -20.93 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:32 2006