Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,938,987 – 5,939,080 |
Length | 93 |
Max. P | 0.691949 |
Location | 5,938,987 – 5,939,080 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 81.65 |
Mean single sequence MFE | -34.62 |
Consensus MFE | -24.59 |
Energy contribution | -25.48 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.32 |
Mean z-score | -1.64 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5938987 93 + 22224390 AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCAACGGCGACCGCGACAGCGACUGCUUAAAAGC .......((((.....((((((..(((((((((((....)((((....))))))))))))))..))))))..))))(((....)))....... ( -34.20) >DroPse_CAF1 28807 79 + 1 --ACCCAGUGUAG--UGUCGUUGUUGUUGCUGACGAC-----CGAC-GCGCUGCCGUUGACGCUGGCGCUGGCGCCAG----UGCUUAAAAGC --.....(.((((--((.((((((((((...))))).-----))))-)))))))).((((((((((((....))))))----)).)))).... ( -32.30) >DroSec_CAF1 26366 93 + 1 AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCGACGGCAACGGCGACAGCGACUGCUUAAAAGC ......(((((....((((((...(((((((((((....)((((....)))))))))))))).((....)))))))).)))))(((....))) ( -35.80) >DroSim_CAF1 32636 93 + 1 AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCGACGGCGACCGCGACAGCGACUGCUUAAAAGC .......((((...((((((((...((((((((((....)((((....)))))))))))))))))))))...))))(((....)))....... ( -33.60) >DroEre_CAF1 26247 93 + 1 AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUGCGUCGACUGCGACGCCGGCAGCGACGGCGACCGCGACAGCGACUGCUUAAAAGC .......((((...((((((((...((((((((((..((((.....)))).))))))))))))))))))...))))(((....)))....... ( -34.30) >DroYak_CAF1 29142 87 + 1 AUACUUGGUUGAAUUUGUUGUUAGUGCUGCCGGCGACAGCGUCGACAGCGACGUCGGCAGCGACGCC------GGCAGCGACUGCUUAAAAGC .....................((((((((((((((...((((((((......)))))).))..))))------)))))).))))......... ( -37.50) >consensus AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCGACGGCGACCGCGACAGCGACUGCUUAAAAGC .......((((.....((((((..(((((((((((....)((((....))))))))))))))..)))))).....))))....(((....))) (-24.59 = -25.48 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:28 2006