Locus 2192

Sequence ID X_DroMel_CAF1
Location 5,936,695 – 5,936,807
Length 112
Max. P 0.898984
window3561

overview

Window 1

Location 5,936,695 – 5,936,807
Length 112
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 84.57
Mean single sequence MFE -35.88
Consensus MFE -25.12
Energy contribution -26.04
Covariance contribution 0.92
Combinations/Pair 1.18
Mean z-score -2.33
Structure conservation index 0.70
SVM decision value 1.01
SVM RNA-class probability 0.898984
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5936695 112 + 22224390
CAAGGCUAUC--AGCUCAGCUGGCAGCCCUAACACAUGGGGCAGCCA--AAAAAAACCCGUUUCCACCGCCAGUUGGCGGUAUUUUUAAAUAGCAUCUUCGAUGGCAUCAGUUGUA
....((((((--......((((((.((((((.....)))))).))).--................((((((....))))))..........)))......)))))).......... ( -36.70)
>DroSec_CAF1 24325 112 + 1
CAAGGCUAUC--AGUUGAUCUGGCAGCCCUAACACAUGGUGCAGCCA--AAAAAAACCCGUUUCCACCGCCAGUUGGCGGUAUUUUUGAAUAGCAUUUUUGAUGGCAUCAGUUGAA
....((((((--(((((.((((((.((((........)).)).))))--................((((((....))))))......)).)))).....))))))).......... ( -32.70)
>DroSim_CAF1 30405 113 + 1
CAAGGCUAUC--AGUUGAUCUGGCAGCCCUAACACAUGGUGCAGCCG-AAAAAAAACCCGUUUCCACCGCCAGUUGGCGGUAUUUUUGAAUAGCAUCUUUGAUGGCAUCAGUUGAA
....((((((--((..((((((((.((((........)).)).))).-.................((((((....))))))..........)).))).)))))))).......... ( -33.60)
>DroEre_CAF1 24067 113 + 1
CAAGGCUGUC--AGAUCAUCUGGCAGCC-CAACACAGAGGGCAGGCACAAAAAAAACCCGUUUCAACCGCUAAUGGGCGGUAUUUUUGAACAGCGCCUUUGACAGCAGCAAAUGAA
...(((((((--((.....)))))))))-.....((((((((.(...(((((((((....)))..((((((....)))))).))))))..).)).))))))............... ( -36.40)
>DroYak_CAF1 26864 115 + 1
CAAGGCUAUCGCAGGUCAUCUGGCAGCCCCAACAAACCGGGCAGGCA-AAAAUAAACCCGUUUCCACCGCUAGUUGGCGGUAUUUUUGAAAAGCGCCUGCGAUGGCAGCAGAUUAA
....((((((((((((......((.((((.........))))...((-(((((............((((((....)))))))))))))....)))))))))))))).......... ( -40.00)
>consensus
CAAGGCUAUC__AGUUCAUCUGGCAGCCCUAACACAUGGGGCAGCCA_AAAAAAAACCCGUUUCCACCGCCAGUUGGCGGUAUUUUUGAAUAGCAUCUUUGAUGGCAUCAGUUGAA
....((((((..........((((.((((((.....)))))).))))..................((((((....))))))...................)))))).......... (-25.12 = -26.04 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:27 2006