Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,934,756 – 5,934,853 |
Length | 97 |
Max. P | 0.897486 |
Location | 5,934,756 – 5,934,853 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.95 |
Mean single sequence MFE | -34.90 |
Consensus MFE | -26.68 |
Energy contribution | -27.16 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.21 |
Mean z-score | -2.10 |
Structure conservation index | 0.76 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5934756 97 + 22224390 UAUCGGAUCGUCCCACGGGGCGAAUACAUAUUUCUCGUAUCUCUUGCGGAUUAGGACGCUCAGGACGGCCUCCUUGCUGGAGGCCACCUCUUGAUCC ....(((((((((....(((((......((..((.((((.....)))))).))...))))).))))(((((((.....))))))).......))))) ( -38.30) >DroSec_CAF1 22440 97 + 1 UAUGGGAUCGUCCCACGGUGCGAAUACAUAUUGCUCGUAUCUCGUGCGGAUUAGAUAGCGCAGGACGGCUUCCUUGCUGGAGGCCACAUCCUGAUCC ....(((((((((...(((((((...........)))))))..((((..........)))).))))(((((((.....))))))).......))))) ( -37.70) >DroSim_CAF1 28565 97 + 1 UAUGGGAUCGUCCCACGGUGCGAAUACAUAUUGCUCGUAUCUCGUGCGGAUUAGAUAGCGCAGGACGGCUUCCUUGCUGGAGGCCACAUCCUGAUCC ....(((((((((...(((((((...........)))))))..((((..........)))).))))(((((((.....))))))).......))))) ( -37.70) >DroEre_CAF1 22039 97 + 1 UAUGGGAUCGUCCCAACGAGCGAAUGUAUAGUUUUCGUAUCUCGUACGGAUGAGGAUGCGCAGGUCGGUCUCCUUACCGGAAGACAACUCCUGAUCC .......((((((..(((((((((.........))))...)))))..))))))((((...((((...((((((.....)).))))....)))))))) ( -29.30) >DroYak_CAF1 24869 97 + 1 UAUGGGAUCGUCCCAACGGGCGAAUAUAUAUUUUUCGUAUCUCGUGCGAAUAAAGAAGCGCAGGACGGUCUCCUUACUGGAGGACACCUCCUGAUCC ...((((((((((......(((((.........))))).....((((..........)))).))))))))))......(((((...)))))...... ( -31.50) >consensus UAUGGGAUCGUCCCACGGGGCGAAUACAUAUUUCUCGUAUCUCGUGCGGAUUAGGAAGCGCAGGACGGCCUCCUUGCUGGAGGCCACCUCCUGAUCC ....(((((((((....(((((((.......)))(((((.....)))))........)))).))))(((((((.....))))))).......))))) (-26.68 = -27.16 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:25 2006