Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 775,141 – 775,231 |
Length | 90 |
Max. P | 0.531974 |
Location | 775,141 – 775,231 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -16.19 |
Energy contribution | -16.16 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.57 |
Structure conservation index | 0.67 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 775141 90 - 22224390 C------------CCUUUCUCUCUGUGUACGCAGAAGGAAAAACAUGAAAACAUGC-------CACUCACCAUCCAGCUUG------CUGCUGC-----AACUUUCCCGUUUGGCUUUUU .------------..((((..(((((....)))))..)))).............((-------((.........((((...------..)))).-----(((......)))))))..... ( -19.40) >DroSec_CAF1 89257 96 - 1 C------------CAUUUCUCUCUGUGCACGCAGAAAGAAAAACAUGAAAACAUGC-------CACUCACCACCCGGCUUGCACUCGCUGCUGC-----AACUUUCCCGUUUGGCUUUUU .------------..(((((.(((((....))))).)))))..((((....)))).-------......(((..(((.((((((.....).)))-----)).....)))..)))...... ( -21.60) >DroSim_CAF1 50459 96 - 1 C------------CAUUUCUCUCUGUGCACGCAGAAAGAAAAACAUGAAAACAUGC-------CACUCACCACCCGGCUUGCACUCGCUGCUGC-----AACUUUCCCGUUUGGCUUUUU .------------..(((((.(((((....))))).)))))..((((....)))).-------......(((..(((.((((((.....).)))-----)).....)))..)))...... ( -21.60) >DroEre_CAF1 103695 113 - 1 CAAUGUGAGGCGAGGUUUCUCUCUGUGUACGCAGAAGG-AAAACAUGAAAACAUGAA-AACACCACCCACCACCCAGCCUGCAGUCGCUGCUGC-----AACUUUCCCGUUUGGCUUUUU ....(((.((.(..(((((..(((((....)))))..)-)...((((....))))..-)))..).))))).....((((.(((((....)))))-----(((......))).)))).... ( -29.00) >DroYak_CAF1 91280 120 - 1 CAAUGUGAGGCGACGUUUCUCUCUGUGUACGCAGAAAGAAAAACACGAAAACAUGCCACUCACCACCCACCACCCAGCUUGCAGUCGCUGCUGCAACGCAACUUUCCCGUUUGGCUUUUU ..((((....((...(((((.(((((....))))).)))))....))...))))((((..................(((((((((....))))))).))(((......)))))))..... ( -29.80) >consensus C____________CAUUUCUCUCUGUGUACGCAGAAAGAAAAACAUGAAAACAUGC_______CACUCACCACCCAGCUUGCACUCGCUGCUGC_____AACUUUCCCGUUUGGCUUUUU ...............(((((.(((((....))))).)))))..((((....))))..............(((..((((..((....)).))))......(((......))))))...... (-16.19 = -16.16 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:16 2006