Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,916,641 – 5,916,740 |
Length | 99 |
Max. P | 0.630791 |
Location | 5,916,641 – 5,916,740 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 80.85 |
Mean single sequence MFE | -25.70 |
Consensus MFE | -19.19 |
Energy contribution | -19.50 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.11 |
Mean z-score | -1.59 |
Structure conservation index | 0.75 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5916641 99 + 22224390 GCAAAAACAAAAGCGGACGGAAGCUGCAGCUGCAGCUCCAAAAAGCUAAGGGUAAACA--CGCCGCCAAAGUCUACGUCGAGCUGGAAACUGAAACUGUGC------- (((........(((.((((((.(((((....))))))))...........(((.....--.)))............)))..)))(....)........)))------- ( -25.20) >DroSec_CAF1 3211 106 + 1 GCAAAAACAAAAGCGGACGGAAGCUGCAGCUGCAGCUCCAGAAAGCUAAGGGCAAACA--CGCCGCCAAAGUCUGCGUCGAGCUGGAAACUGAAACUGAGCUGAAAUU ............(((((((((.(((((....))))))))...........(((.....--.)))......)))))).((.(((((....)........)))))).... ( -31.80) >DroEre_CAF1 3479 103 + 1 ---AAAACAAAAGCGGACGGAAGUUGCAGCUGCAGAUCCAGAAAUCUAAAGGCAAACA--CGCCGCCAAAGUUUAAGUCGAGCUGGAAACUGAAACUGAGCUACAACU ---.........(((.((....)))))((((.(((...(((.........(((.....--.))).(((..((((.....)))))))...)))...)))))))...... ( -23.30) >DroYak_CAF1 6662 89 + 1 -----AACGAAAGCUGACGGAAGUUGCAGCUGCAGAUGCAGAAAGCUAUAGGCAAACAACCGCCGCCAAAGUCUAAGUCGAGCUGGAAACUGAA-------------- -----......((((((((((..((((..((((....)))).........(((........)))).)))..)))..))).))))(....)....-------------- ( -22.50) >consensus ___AAAACAAAAGCGGACGGAAGCUGCAGCUGCAGAUCCAGAAAGCUAAAGGCAAACA__CGCCGCCAAAGUCUAAGUCGAGCUGGAAACUGAAACUGAGC_______ ...........(((.((((((.(((((....))))))))...........(((........)))............)))..)))(....).................. (-19.19 = -19.50 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:13 2006