Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,906,556 – 5,906,673 |
Length | 117 |
Max. P | 0.566490 |
Location | 5,906,556 – 5,906,673 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 70.98 |
Mean single sequence MFE | -40.57 |
Consensus MFE | -14.67 |
Energy contribution | -16.07 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.26 |
Mean z-score | -1.86 |
Structure conservation index | 0.36 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5906556 117 + 22224390 GCGCAGCCAUCUGAGGCCGGUUAAUUCCGCUGGUUCCGGUAUAGGAUUAUCAAGCGGAUCUGCUGGAUCUGCUGGAUCUGCUGGAUCUUCUGGAUCAGGAUCAAGAUCAGGUGGGGU ......((((((((....((((...((((..((.((((((...(((((....((((((((.....)))))))).))))))))))).))..))))....))))....))))))))... ( -46.00) >DroSec_CAF1 1436 99 + 1 GCGCAGCCAUCUGAGGCCAGUUAAUUCCGCUGGUUCCGGUAUAGGAUUAACAAGCGGAUCUGC------------------UGGAUCUUCGGGAUCAGGAUCAAGAUCAGGAGGGGU ((.(..((..(((((((((((....((((((.(((((......)))...)).))))))...))------------------)))..))))))((((........)))).))..).)) ( -36.00) >DroSim_CAF1 1437 99 + 1 GCGCAGCCAUCUGAGGCCGGUUAAUUCCGCUGGUUCCGGUACAGGAUUAACAAGCGGAUCUGC------------------UGGAUCUUCGGAAUCAGGAUCAAGAUCAGGAGGGGU ((.(..((.((((((((((((....((((((.(((((......)))...)).))))))...))------------------)))..))))))).....(((....))).))..).)) ( -34.20) >DroEre_CAF1 1465 99 + 1 GCGCAGCCAGCUGAGGCCGGUUAGUUCCUCCGUAUCCGGCAUCGGCUUAGCAGGCGGAUCUGC------------------UGGAUCCGCUGGAUCAGGAUCAGGAUCAGGUGGAGU ......(((.((((..((((((...(((..((.((((((((((.(((.....))).))..)))------------------))))).))..)))....)))).)).)))).)))... ( -39.90) >DroYak_CAF1 1409 99 + 1 GCGCAGCCAUCUGCGGCCGGUCAACUCCUCUGGUUCCGGCAUGGGAUUAGCAGGCGGUCCUGC------------------UGGAUCUGCUGGAACAGGAUCAGGAUCAGGAGGAGU .(((((....)))))........((((((((.(((((((((.((..((((((((....)))))------------------))).)))))))))))..(((....))).)))))))) ( -45.70) >DroAna_CAF1 13230 99 + 1 ACGCACUCACCUGCGACCAGUCAGCUCAGCAGGAUCCGG------AUCCAUCAGCAGAUCUGCA------GCAGGCUCUGGCCUAGUAUCUGGAUCUGGAUCUGGGUCUGG------ .((((......)))).((((...(((((....(((((((------(((((...(((....))).------((((((....)))).))...)))))))))))))))))))))------ ( -41.60) >consensus GCGCAGCCAUCUGAGGCCGGUUAAUUCCGCUGGUUCCGGUAUAGGAUUAACAAGCGGAUCUGC__________________UGGAUCUUCUGGAUCAGGAUCAAGAUCAGGAGGGGU ..((((((......)))........((((((...(((......)))......))))))..)))......................(((.(..((((........))))..).))).. (-14.67 = -16.07 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:11 2006