Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 773,113 – 773,204 |
Length | 91 |
Max. P | 0.739029 |
Location | 773,113 – 773,204 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -17.40 |
Energy contribution | -18.27 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.20 |
Mean z-score | -2.19 |
Structure conservation index | 0.55 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.739029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 773113 91 + 22224390 GAGGCCAUUUCGUUGCGAGUUCUUUAAGAGGCCGCC--AGGACUC-UUCGUCCUUGGGCGC-----------------CUGGUGUGCUUUUAAUUAGAAGACGGGCCAUAA ..((((...(((...)))((..((((((((((((((--(((....-..((((....)))))-----------------)))))).)))))...)))))..)).)))).... ( -33.70) >DroSec_CAF1 87212 83 + 1 GAGGCCAUUUCGUUGCGAGUUCUUUACGA----------GGACUC-UUCGUCCUUGGGAGC-----------------CUGGUGUACUUUUAAUUAGAAGACGGGCCAUAA ..((((........((.((((((...(((----------((((..-...))))))))))).-----------------)).))((.(((((....))))))).)))).... ( -25.90) >DroSim_CAF1 48459 91 + 1 GAGGCCAUUUCGCUGCGAGUUCUUUACGAGGCCGCC--AGGACUC-UUCGUCCUUGGGCGC-----------------CUGGUGUGCUUUUAAUUAGAAGACGGGCCAUAA ..((((.((((..((.((((....(((.((((.(((--(((((..-...)))))..)))))-----------------)).))).)))).))....))))...)))).... ( -33.60) >DroEre_CAF1 101736 92 + 1 GAGGCCAUUUCGCUGCGAGUUCUUUACGAUGCCGCC--AGGACUCGUUCGUCCUUGGGCGC-----------------CUGGUGUGUUUUUAAUUAGAGAACGGGCCAUAA ..((((...(((...)))((((((((....((((((--(((...((((((....)))))))-----------------)))))).)).......)))))))).)))).... ( -33.80) >DroYak_CAF1 89230 91 + 1 GAGGCCAUUUCGCUGCGAGUUCUUUACGAUGCCGCC--AGGACAC-UUCGUCCUUGGGCGC-----------------CUGGUGUGUUUUUAAUUAGAAGACGGGCCAUAA .((((...((((...))))...........(((.(.--(((((..-...))))).))))))-----------------))(((.(((((((.....))))))).))).... ( -29.10) >DroAna_CAF1 103932 109 + 1 GGCGCCAUUUCGUAGCGACAUCUUUACGAUCCCGCCCAAGGACA--UUUAUCCUUGGGCGCUACUCCCUACUCCCACCCCUCCGCUCUUCUAAUUAGAAGCCAAGCCAUAA (((........((((((..(((.....)))..)(((((((((..--....))))))))))))))......................(((((....)))))....))).... ( -33.50) >consensus GAGGCCAUUUCGCUGCGAGUUCUUUACGAUGCCGCC__AGGACUC_UUCGUCCUUGGGCGC_________________CUGGUGUGCUUUUAAUUAGAAGACGGGCCAUAA ..((((..........................((((..(((((......)))))..)))).......................((.(((((....))))))).)))).... (-17.40 = -18.27 + 0.86)
Location | 773,113 – 773,204 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.27 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -18.76 |
Energy contribution | -19.40 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -1.35 |
Structure conservation index | 0.70 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 773113 91 - 22224390 UUAUGGCCCGUCUUCUAAUUAAAAGCACACCAG-----------------GCGCCCAAGGACGAA-GAGUCCU--GGCGGCCUCUUAAAGAACUCGCAACGAAAUGGCCUC ....((((.(((((........))).))...((-----------------(((((..(((((...-..)))))--))).))))......................)))).. ( -25.10) >DroSec_CAF1 87212 83 - 1 UUAUGGCCCGUCUUCUAAUUAAAAGUACACCAG-----------------GCUCCCAAGGACGAA-GAGUCC----------UCGUAAAGAACUCGCAACGAAAUGGCCUC ....((((.((((..................))-----------------))......((((...-..))))----------((((...(....)...))))...)))).. ( -15.77) >DroSim_CAF1 48459 91 - 1 UUAUGGCCCGUCUUCUAAUUAAAAGCACACCAG-----------------GCGCCCAAGGACGAA-GAGUCCU--GGCGGCCUCGUAAAGAACUCGCAGCGAAAUGGCCUC ....((((.(((((........))).))((.((-----------------(((((..(((((...-..)))))--))).)))).))...................)))).. ( -26.80) >DroEre_CAF1 101736 92 - 1 UUAUGGCCCGUUCUCUAAUUAAAAACACACCAG-----------------GCGCCCAAGGACGAACGAGUCCU--GGCGGCAUCGUAAAGAACUCGCAGCGAAAUGGCCUC ....((((..(((.((................(-----------------.((((..(((((......)))))--)))).).((.....))......)).)))..)))).. ( -26.90) >DroYak_CAF1 89230 91 - 1 UUAUGGCCCGUCUUCUAAUUAAAAACACACCAG-----------------GCGCCCAAGGACGAA-GUGUCCU--GGCGGCAUCGUAAAGAACUCGCAGCGAAAUGGCCUC ....((((........................(-----------------.((((..(((((...-..)))))--)))).).((((...(....)...))))...)))).. ( -25.50) >DroAna_CAF1 103932 109 - 1 UUAUGGCUUGGCUUCUAAUUAGAAGAGCGGAGGGGUGGGAGUAGGGAGUAGCGCCCAAGGAUAAA--UGUCCUUGGGCGGGAUCGUAAAGAUGUCGCUACGAAAUGGCGCC .(((..(((.((((((....)))..))).)))..)))((.((.....(((((((((((((((...--.))))))))))((.(((.....))).)))))))......)).)) ( -41.10) >consensus UUAUGGCCCGUCUUCUAAUUAAAAGCACACCAG_________________GCGCCCAAGGACGAA_GAGUCCU__GGCGGCAUCGUAAAGAACUCGCAACGAAAUGGCCUC ....((((...........................................((((..(((((......)))))..))))...((((...(....)...))))...)))).. (-18.76 = -19.40 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:15 2006