Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,900,237 – 5,900,348 |
Length | 111 |
Max. P | 0.662840 |
Location | 5,900,237 – 5,900,348 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -28.58 |
Energy contribution | -28.98 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.30 |
Structure conservation index | 0.84 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5900237 111 + 22224390 AGGCAAAUGAG------AGGCAGGCGGCAGUGGCAAGCUCAUCUUGCACGCAAUCAAACUCCGAAUGAUUUGAAGCGCAAAAUUUAAAUUGUUUUGCCAGCCGACGGUUUCACCUGG ..........(------((((.(((((((((((((((.....))))).)))...........(((..(((((((........)))))))..))))))).)))....)))))...... ( -31.70) >DroSec_CAF1 16928 111 + 1 AGGCAAAUGAG------AGGCAGGCAGCGGUGGCAAGCUCAUCUUGCACGCAAUCAAACUCCGAAUGAUUUGAAGCGCAAAAUUUAAAUUGUUUUGCCAGCCGAGGGUUUCACCUGG ...........------.(((.(((((((...(((((.....))))).)))...........(((..(((((((........)))))))..))))))).))).(((......))).. ( -32.00) >DroSim_CAF1 14279 111 + 1 AGGCAAAUGAG------AGGCAGGCAGCGGUGGCAAGCUCAUCUUGCACGCAAUCAAACUCCGAAUGAUUUGAAGCGCAAAAUUUAAAUUGUUUUGCCAGCCGCGGGUUUCACCUGG ...........------.(((.(((((((...(((((.....))))).)))...........(((..(((((((........)))))))..))))))).))).((((.....)))). ( -33.60) >DroEre_CAF1 17051 110 + 1 AGGCAAAUGAG------CGGCAGGCAGCGGUGGCAAGCUCAUCUUGCACGCAAUCAAACUCCAAAUGAUUUGAAGCGCAAAAUUAAAAUUGUUUUGCCAGCCGCGGGUUUCACC-CA ..........(------((((..((.(((...(((((.....))))).)))..(((((.((.....))))))).))(((((((.......)))))))..)))))(((.....))-). ( -37.00) >DroYak_CAF1 17212 117 + 1 AGGCAAAUGAGAGGCGGCGGCAGGCAGCGGUGGCAAGCUCAUCUUGCACGCAAUCAAACUCGGAAUGAUUUGAAGCGCAAAAUUUAAAUUGUUUUGCCAGCCGAGGGUUUCACCCCA ..........(((((..((((.(((.(((...(((((.....))))).)))..........((((..(((((((........)))))))..))))))).))))...)))))...... ( -36.40) >consensus AGGCAAAUGAG______AGGCAGGCAGCGGUGGCAAGCUCAUCUUGCACGCAAUCAAACUCCGAAUGAUUUGAAGCGCAAAAUUUAAAUUGUUUUGCCAGCCGAGGGUUUCACCUGG ..................(((.(((((((...(((((.....))))).)))...........(((..(((((((........)))))))..))))))).)))..(((.....))).. (-28.58 = -28.98 + 0.40)
Location | 5,900,237 – 5,900,348 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -27.88 |
Energy contribution | -28.36 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.04 |
Mean z-score | -1.35 |
Structure conservation index | 0.84 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5900237 111 - 22224390 CCAGGUGAAACCGUCGGCUGGCAAAACAAUUUAAAUUUUGCGCUUCAAAUCAUUCGGAGUUUGAUUGCGUGCAAGAUGAGCUUGCCACUGCCGCCUGCCU------CUCAUUUGCCU .(((((((....((.(((.((((................((((.((((((........))))))..))))(((((.....)))))...))))))).))..------.)))))))... ( -31.70) >DroSec_CAF1 16928 111 - 1 CCAGGUGAAACCCUCGGCUGGCAAAACAAUUUAAAUUUUGCGCUUCAAAUCAUUCGGAGUUUGAUUGCGUGCAAGAUGAGCUUGCCACCGCUGCCUGCCU------CUCAUUUGCCU ..(((..((......(((.((((................((((.((((((........))))))..))))(((((.....)))))......)))).))).------....))..))) ( -31.10) >DroSim_CAF1 14279 111 - 1 CCAGGUGAAACCCGCGGCUGGCAAAACAAUUUAAAUUUUGCGCUUCAAAUCAUUCGGAGUUUGAUUGCGUGCAAGAUGAGCUUGCCACCGCUGCCUGCCU------CUCAUUUGCCU ..(((..((....(.(((.((((................((((.((((((........))))))..))))(((((.....)))))......)))).))).------)...))..))) ( -31.50) >DroEre_CAF1 17051 110 - 1 UG-GGUGAAACCCGCGGCUGGCAAAACAAUUUUAAUUUUGCGCUUCAAAUCAUUUGGAGUUUGAUUGCGUGCAAGAUGAGCUUGCCACCGCUGCCUGCCG------CUCAUUUGCCU .(-((..((....(((((.((((................((((.((((((........))))))..))))(((((.....)))))......)))).))))------)...))..))) ( -37.20) >DroYak_CAF1 17212 117 - 1 UGGGGUGAAACCCUCGGCUGGCAAAACAAUUUAAAUUUUGCGCUUCAAAUCAUUCCGAGUUUGAUUGCGUGCAAGAUGAGCUUGCCACCGCUGCCUGCCGCCGCCUCUCAUUUGCCU .((((((.......((((.((((................((((.((((((........))))))..))))(((((.....)))))......)))).)))).)))))).......... ( -34.00) >consensus CCAGGUGAAACCCUCGGCUGGCAAAACAAUUUAAAUUUUGCGCUUCAAAUCAUUCGGAGUUUGAUUGCGUGCAAGAUGAGCUUGCCACCGCUGCCUGCCU______CUCAUUUGCCU .(((((((.......(((.(((.................((((.((((((........))))))..))))(((((.....))))).......))).)))........)))))))... (-27.88 = -28.36 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:02 2006