Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,899,664 – 5,899,807 |
Length | 143 |
Max. P | 0.994186 |
Location | 5,899,664 – 5,899,770 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.21 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -17.00 |
Energy contribution | -17.20 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.85 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5899664 106 - 22224390 GCCGCU-AAAAGAGCCAAGAAAAUAAUGAUGAAAAAAAA-------------CAGAGGGUGUUGCAAAAGGGGUAAAUGACCGCUGAUGGCGGCAAAAAUUGAAUUGUUUUGCAUAAAUU ...(((-.....))).............(((....((((-------------(((.((.((((((...((.(((.....))).))....))))))....))...))))))).)))..... ( -19.20) >DroSec_CAF1 16357 104 - 1 GCCGCU-AAAAGAGCCAAGAAAAUAAUGAUGAAA--AAA-------------CAGAGGGUGUUGCAAAAGGGGUAAAUGACCGCUGAUGGCGGCAAAAAUUGAAUUGUUUUGCAUAAAUU ((((((-(.....................(....--)..-------------(((.((...((((.......))))....)).))).))))))).......................... ( -19.10) >DroSim_CAF1 13702 104 - 1 GCCGCU-AAAAGAGCCAAGAAAAUAAUGAUGAAA--AAA-------------CAGAGGGUGUUGCAAAAGGGGUAAAUGACCGCUGAUGGCGGCAAAAAUUGAAUUGUUUUGCAUAAAUU ((((((-(.....................(....--)..-------------(((.((...((((.......))))....)).))).))))))).......................... ( -19.10) >DroEre_CAF1 16466 103 - 1 GCCGCU--AAAAAGCCAAGAAAAUAAUGAUGAAA--AAA-------------CCGAGGGUGUUGCAAAAGGGGUAAAUGACCGCUGGUGGCGGCAAAAAUUGAAUUGUUUUGCAUAAAUU ((((((--(...(((...................--...-------------((....(.....)....))(((.....))))))..))))))).......................... ( -21.60) >DroYak_CAF1 16597 118 - 1 GCCGCUUAAAAAAGCCAAGAAAAUAAUGAUGAAA--AAAAAAUUAAAAACAGCAGAGGGUGUUGCAAACGGGGUAAAUGACCGCUGAUGGCGGCAAAAAUUGAAUUGUUUUGCAUAAAUU ((.((((....))))...................--.........((((((.(((....((((((...((((((.....))).)))...))))))....)))...))))))))....... ( -21.50) >consensus GCCGCU_AAAAGAGCCAAGAAAAUAAUGAUGAAA__AAA_____________CAGAGGGUGUUGCAAAAGGGGUAAAUGACCGCUGAUGGCGGCAAAAAUUGAAUUGUUUUGCAUAAAUU ((((((......))).....................................(((.((...((((.......))))....)).)))..))).((((((.........))))))....... (-17.00 = -17.20 + 0.20)
Location | 5,899,704 – 5,899,807 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.24 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -22.56 |
Energy contribution | -22.60 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.60 |
Structure conservation index | 0.81 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5899704 103 - 22224390 UUUGCCGUGUGUUGC---GCCCUGCAGCAAAAUGAUGGGUGCCGCU-AAAAGAGCCAAGAAAAUAAUGAUGAAAAAAAA-------------CAGAGGGUGUUGCAAAAGGGGUAAAUGA ((((((.(.(((.((---((((((((.(.........).))).(((-.....)))........................-------------...))))))).)))...).))))))... ( -25.70) >DroSec_CAF1 16397 101 - 1 UUUGCCGUGUGUUGC---GCCCUGCAGCAAAAUGAUGGGUGCCGCU-AAAAGAGCCAAGAAAAUAAUGAUGAAA--AAA-------------CAGAGGGUGUUGCAAAAGGGGUAAAUGA ((((((.(.(((.((---((((((((.(.........).))).(((-.....)))...................--...-------------...))))))).)))...).))))))... ( -25.70) >DroSim_CAF1 13742 101 - 1 UUUGCCGUGUGUUGC---GCCCUGCAGCAAAAUGAUGGGUGCCGCU-AAAAGAGCCAAGAAAAUAAUGAUGAAA--AAA-------------CAGAGGGUGUUGCAAAAGGGGUAAAUGA ((((((.(.(((.((---((((((((.(.........).))).(((-.....)))...................--...-------------...))))))).)))...).))))))... ( -25.70) >DroEre_CAF1 16506 100 - 1 UUUGCCGUGUGUAGC---GCCCUGCAGCAAAAUGAUGGGUGCCGCU--AAAAAGCCAAGAAAAUAAUGAUGAAA--AAA-------------CCGAGGGUGUUGCAAAAGGGGUAAAUGA ((((((.(.((((((---((((((((.(.........).))).(((--....)))...................--...-------------...)))))))))))...).))))))... ( -28.90) >DroYak_CAF1 16637 118 - 1 UUUGCCGUGUGUUGUGAAGCCCUGCAGCCAAAUGAUGGGUGCCGCUUAAAAAAGCCAAGAAAAUAAUGAUGAAA--AAAAAAUUAAAAACAGCAGAGGGUGUUGCAAACGGGGUAAAUGA ((((((.(((.(((..(.((((((((.(((.....))).))).((((....))))...................--...................))))).)..)))))).))))))... ( -32.60) >consensus UUUGCCGUGUGUUGC___GCCCUGCAGCAAAAUGAUGGGUGCCGCU_AAAAGAGCCAAGAAAAUAAUGAUGAAA__AAA_____________CAGAGGGUGUUGCAAAAGGGGUAAAUGA ((((((.(...((((...((((((((.(.........).))).(((......)))........................................)))))...))))..).))))))... (-22.56 = -22.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:59 2006