Locus 2174

Sequence ID X_DroMel_CAF1
Location 5,898,380 – 5,898,486
Length 106
Max. P 0.983780
window3525

overview

Window 5

Location 5,898,380 – 5,898,486
Length 106
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 86.92
Mean single sequence MFE -33.25
Consensus MFE -26.04
Energy contribution -27.10
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -2.91
Structure conservation index 0.78
SVM decision value 1.95
SVM RNA-class probability 0.983780
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5898380 106 - 22224390
UAACUGGGCGGCGAGGCGAACUGGUUGCCCAGGCCGUUUGGUGCACCGAAAAUAUUUGGGAAAGAUUUCACAGUAUUUUUGA----AAAUUAAAUUGAUAAAAUGGAUAC
...(((((((((.((.....)).))))))))).((((((((....))(((((((((((..(....)..)).)))))))))..----..............)))))).... ( -33.00)
>DroSec_CAF1 15112 106 - 1
UAACUGGGCGGCGAGGCGAACUGGUUGCCCAGGCCGUUUGGUGCACCGAAAAUAUUUGGGAAAGAUUUCACAGUAUUUUUGG----AAAUUAAAUUGAUAAAAUGGAUAC
...(((((((((.((.....)).))))))))).((((((....(((((((((((((((..(....)..)).)))))))))))----.........))...)))))).... ( -35.60)
>DroEre_CAF1 15203 104 - 1
UAACUGGGCGGCGAGGCGAACUGGUUGCCCAGGCCGUUUGGUGCACCGAAAAUAUUUGGGAAUGGUUUCAUGGUGUUCUUCAA-----AUUAAAAUAAUAUACGAG-UAA
...(((((((((.((.....)).)))))))))...((((((.(((((((((.((((....)))).))))..)))))...))))-----))................-... ( -32.00)
>DroYak_CAF1 15301 110 - 1
UAACUGGGCGGCGAGGCGAACUGGUUGCCCAGGCCGUUUGCUGCACCGAAAAUAUUUGGGAAAGCUUUCAAAGAGUUUUUUGAUAGAUAUUAAAUUGAUAAAAUAGAUAA
....(((((((((((.((..((((....))))..)))))))))).)))..((((((((.((((((((.....))))))))...))))))))................... ( -32.40)
>consensus
UAACUGGGCGGCGAGGCGAACUGGUUGCCCAGGCCGUUUGGUGCACCGAAAAUAUUUGGGAAAGAUUUCACAGUAUUUUUGA____AAAUUAAAUUGAUAAAAUAGAUAA
...(((((((((.((.....)).)))))))))((........)).(((((((((((((..(....)..)).)))))))))))............................ (-26.04 = -27.10 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:55 2006