Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,883,028 – 5,883,130 |
Length | 102 |
Max. P | 0.918763 |
Location | 5,883,028 – 5,883,130 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.81 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -22.27 |
Energy contribution | -22.83 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -3.59 |
Structure conservation index | 0.82 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5883028 102 + 22224390 AUGGAAAACCAUCGAUGAUUCCUCGAAACACAUCGAUGCUUGUGAUUUUUCGAAAACAUCGAUGACAUCGAGUUGGCAUCGAUGUUUCUCCACCUCUAACCG .((((.((.((((((((.(..(((((....((((((((.((.(((....))).)).))))))))...)))))..).)))))))).)).)))).......... ( -35.60) >DroSec_CAF1 88408 102 + 1 AUAGAAAAACAUCGAUGAUUCCAUGAAAAACAUCGAUGCUUUUGAUUUUUCGAAAACAUUGAUGACAUCGAGUAUGCAUCUAUGUUUCUCCACCUCUAACCG ...((.((((((.((((((((.(((.....((((((((.((((((....)))))).)))))))).))).))))...)))).)))))).))............ ( -25.00) >DroSim_CAF1 90527 102 + 1 AUAGAAAAACAUCGAUGAUUCCAUGAAAAACAUCGAUGCUUUAGAUUUUUCGAAAACAUUGAUGACAUCGAGUAUGCAUCUAUGUUUCUCCACCUCUAACCG ...((.((((((.((((((((.(((.....((((((((.(((.((....)).))).)))))))).))).))))...)))).)))))).))............ ( -21.20) >consensus AUAGAAAAACAUCGAUGAUUCCAUGAAAAACAUCGAUGCUUUUGAUUUUUCGAAAACAUUGAUGACAUCGAGUAUGCAUCUAUGUUUCUCCACCUCUAACCG ...((.((((((.((((....(.(((....((((((((.((((((....)))))).))))))))...))).)....)))).)))))).))............ (-22.27 = -22.83 + 0.56)
Location | 5,883,028 – 5,883,130 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 92.81 |
Mean single sequence MFE | -33.53 |
Consensus MFE | -26.17 |
Energy contribution | -26.73 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -3.99 |
Structure conservation index | 0.78 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5883028 102 - 22224390 CGGUUAGAGGUGGAGAAACAUCGAUGCCAACUCGAUGUCAUCGAUGUUUUCGAAAAAUCACAAGCAUCGAUGUGUUUCGAGGAAUCAUCGAUGGUUUUCCAU .........((((((((.((((((((....(((((...(((((((((((..((....))..)))))))))))....)))))....)))))))).)))))))) ( -42.80) >DroSec_CAF1 88408 102 - 1 CGGUUAGAGGUGGAGAAACAUAGAUGCAUACUCGAUGUCAUCAAUGUUUUCGAAAAAUCAAAAGCAUCGAUGUUUUUCAUGGAAUCAUCGAUGUUUUUCUAU .........((((((((((((.((((.((..((.(((.((((.(((((((.((....)).))))))).)))).....))).)))))))).)))))))))))) ( -28.90) >DroSim_CAF1 90527 102 - 1 CGGUUAGAGGUGGAGAAACAUAGAUGCAUACUCGAUGUCAUCAAUGUUUUCGAAAAAUCUAAAGCAUCGAUGUUUUUCAUGGAAUCAUCGAUGUUUUUCUAU .........((((((((((((.((((.((..((.(((.((((.(((((((.((....)).))))))).)))).....))).)))))))).)))))))))))) ( -28.90) >consensus CGGUUAGAGGUGGAGAAACAUAGAUGCAUACUCGAUGUCAUCAAUGUUUUCGAAAAAUCAAAAGCAUCGAUGUUUUUCAUGGAAUCAUCGAUGUUUUUCUAU .........((((((((((((.((((.....((.(((.((((.(((((((.((....)).))))))).)))).....))).))..)))).)))))))))))) (-26.17 = -26.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006