Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 771,306 – 771,396 |
Length | 90 |
Max. P | 0.712760 |
Location | 771,306 – 771,396 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -30.05 |
Energy contribution | -30.17 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.41 |
Structure conservation index | 0.97 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 771306 90 + 22224390 UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUUGACGGCUAAGCGCCAUGAAGGUGAAUU .((((.(((.(((....((((.((((.....))))..))))..((((....))))))).))).))))......((((.....)))).... ( -28.80) >DroSec_CAF1 85312 90 + 1 UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUCGAUGGCUAAGCGCCAUGAAGGUGCAUU .(((..(((.((((...(((.(((((((.(((((.((((....((((....))))))))))))).))))))).)))..)))))))))).. ( -32.10) >DroSim_CAF1 46557 90 + 1 UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUCGAUGGCUAAGCGCCAUGAAGGUGCAUU .(((..(((.((((...(((.(((((((.(((((.((((....((((....))))))))))))).))))))).)))..)))))))))).. ( -32.10) >consensus UUGUCUGCCAUUCAAUUGCGGUUGGCUAAUGGCCAUUUCGCGUGGUCAAGGGACUGAGGGGUCGAUGGCUAAGCGCCAUGAAGGUGCAUU ......(((.((((...(((.(((((((.(((((.((((....((((....))))))))))))).))))))).)))..)))))))..... (-30.05 = -30.17 + 0.11)
Location | 771,306 – 771,396 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -22.90 |
Consensus MFE | -21.67 |
Energy contribution | -21.57 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.79 |
Structure conservation index | 0.95 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 771306 90 - 22224390 AAUUCACCUUCAUGGCGCUUAGCCGUCAACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA .............(((.....)))(((..((..((((((....)))...(((...((((.....))))..)))...)))..))..))).. ( -22.10) >DroSec_CAF1 85312 90 - 1 AAUGCACCUUCAUGGCGCUUAGCCAUCGACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA ...((.((.....)).))...((((((((.......(((....)))...(((...((((.....))))..)))..))).)))))...... ( -23.30) >DroSim_CAF1 46557 90 - 1 AAUGCACCUUCAUGGCGCUUAGCCAUCGACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA ...((.((.....)).))...((((((((.......(((....)))...(((...((((.....))))..)))..))).)))))...... ( -23.30) >consensus AAUGCACCUUCAUGGCGCUUAGCCAUCGACCCCUCAGUCCCUUGACCACGCGAAAUGGCCAUUAGCCAACCGCAAUUGAAUGGCAGACAA ...((.((.....)).))...((((((((.......(((....)))...(((...((((.....))))..)))..))).)))))...... (-21.67 = -21.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:13 2006