Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,877,044 – 5,877,183 |
Length | 139 |
Max. P | 0.941203 |
Location | 5,877,044 – 5,877,151 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 91.59 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -24.47 |
Energy contribution | -25.03 |
Covariance contribution | 0.57 |
Combinations/Pair | 1.14 |
Mean z-score | -3.29 |
Structure conservation index | 0.84 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5877044 107 - 22224390 GUUGUACUGAAGUUCAGUAUACUCUUCUUAAGGUAAGCUAUUCUUCUGAAUUGCUUAUUGUAUGUGCUCAUAUUUUUCUCUCAGUGCCUGGGCACCCUGCUGCUUUU ..(((((((.....)))))))..........(((((((.((((....)))).)))))))(((.(((((((((((........))))..)))))))..)))....... ( -25.40) >DroSec_CAF1 81784 107 - 1 GUUGUACUGAAGUUGAGUAUACUCUUCUUUAGAGAAGCUAUUUUUUUGAAUAGCUGAUUGUAUAUGCUCAUACUUUUCUCUCAGUGCCUGGGCACCCUGCUGCUUUU ...((((((((((((((((((((((.....)))).((((((((....)))))))).......)))))))).)))......)))))))..(((((......))))).. ( -31.30) >DroSim_CAF1 84503 107 - 1 AUUGUAUUGAAGUUGAGUAUACUCCUCUUCAGGGAAGCUAUUCUUUUGAAUAGCUUAUUGUAUGUGCUCAUAUUUUUCUCUCAGUGCCUGGGCACCCUGCUGCUUUU ...(((.(((((..(((....)))..)))))((((((((((((....))))))))).......(((((((((((........))))..))))))))))..))).... ( -30.70) >consensus GUUGUACUGAAGUUGAGUAUACUCUUCUUAAGGGAAGCUAUUCUUUUGAAUAGCUUAUUGUAUGUGCUCAUAUUUUUCUCUCAGUGCCUGGGCACCCUGCUGCUUUU ...((((((((((((((((((((((.....))))(((((((((....)))))))))......)))))))).)))......)))))))..(((((......))))).. (-24.47 = -25.03 + 0.57)
Location | 5,877,077 – 5,877,183 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -16.16 |
Energy contribution | -16.50 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -2.54 |
Structure conservation index | 0.76 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5877077 106 + 22224390 AAUAUGAGCACAUACAAUAAGCAAUUCAGAAGAAUAGCUUACCUUAAGAAGAGUAUACUGAACUUCAGUACAACUAUUGUACUUUAAGUUUGUAAAUAAACUAUGA ..........((((...(((((.((((....)))).)))))..............(((.((((((.((((((.....))))))..))))))))).......)))). ( -18.80) >DroSec_CAF1 81817 106 + 1 AGUAUGAGCAUAUACAAUCAGCUAUUCAAAAAAAUAGCUUCUCUAAAGAAGAGUAUACUCAACUUCAGUACAACUAUUGUAUUUUAAGUUUGUAAAUGAACUAUGA ..((..(((..(((((((.(((((((......)))))))...((.(((..(((....)))..))).)).......))))))).....)))..))............ ( -17.60) >DroSim_CAF1 84536 106 + 1 AAUAUGAGCACAUACAAUAAGCUAUUCAAAAGAAUAGCUUCCCUGAAGAGGAGUAUACUCAACUUCAAUACAAUUAUUGUAUUUUAAGUUUGUAAAUGAACUAUGA ..((..(((..((((((((((((((((....))))))).....(((((..(((....)))..)))))......))))))))).....)))..))............ ( -27.20) >consensus AAUAUGAGCACAUACAAUAAGCUAUUCAAAAGAAUAGCUUCCCUAAAGAAGAGUAUACUCAACUUCAGUACAACUAUUGUAUUUUAAGUUUGUAAAUGAACUAUGA ..((..(((.........(((((((((....))))))))).......((((((....))...))))((((((.....))))))....)))..))............ (-16.16 = -16.50 + 0.34)
Location | 5,877,077 – 5,877,183 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -20.56 |
Energy contribution | -20.90 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.16 |
Mean z-score | -3.13 |
Structure conservation index | 0.82 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5877077 106 - 22224390 UCAUAGUUUAUUUACAAACUUAAAGUACAAUAGUUGUACUGAAGUUCAGUAUACUCUUCUUAAGGUAAGCUAUUCUUCUGAAUUGCUUAUUGUAUGUGCUCAUAUU ....(((((......)))))...((((((..(((.((((((.....))))))))).....((..((((((.((((....)))).))))))..))))))))...... ( -23.40) >DroSec_CAF1 81817 106 - 1 UCAUAGUUCAUUUACAAACUUAAAAUACAAUAGUUGUACUGAAGUUGAGUAUACUCUUCUUUAGAGAAGCUAUUUUUUUGAAUAGCUGAUUGUAUAUGCUCAUACU ......((((..(((((.((...........))))))).))))((((((((((((((.....)))).((((((((....)))))))).......)))))))).)). ( -23.60) >DroSim_CAF1 84536 106 - 1 UCAUAGUUCAUUUACAAACUUAAAAUACAAUAAUUGUAUUGAAGUUGAGUAUACUCCUCUUCAGGGAAGCUAUUCUUUUGAAUAGCUUAUUGUAUGUGCUCAUAUU .....(..(((.(((((.(((..((((((.....))))))((((..(((....)))..))))))).(((((((((....))))))))).))))).)))..)..... ( -28.00) >consensus UCAUAGUUCAUUUACAAACUUAAAAUACAAUAGUUGUACUGAAGUUGAGUAUACUCUUCUUAAGGGAAGCUAUUCUUUUGAAUAGCUUAUUGUAUGUGCUCAUAUU .....(..(((.(((((........((((.....))))((((((..(((....)))..))))))..(((((((((....))))))))).))))).)))..)..... (-20.56 = -20.90 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:45 2006