Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,873,747 – 5,873,840 |
Length | 93 |
Max. P | 0.713859 |
Location | 5,873,747 – 5,873,840 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 73.64 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -13.56 |
Energy contribution | -15.68 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.49 |
Structure conservation index | 0.68 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5873747 93 - 22224390 ------CUCAUAUUCCGUAUGGCAGAUCUGCGAUCUCCGAUCCCCGAUCUCCGAUCCCCGAUCUCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA ------.......(((((..((.(((((((.((((...((((...((((...))))...))))...)))).)))))))))..)))))............ ( -27.00) >DroSim_CAF1 81243 72 - 1 ------CUCAUAUUCCGUAUGGCAGAUCUCCGAACUCCGA---------------------UCCCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA ------.......(((((..((.((((((..(.....)((---------------------((...))))..))))))))..)))))............ ( -11.80) >DroEre_CAF1 76774 85 - 1 UCAUAUCUCAUAUUCCGUAUGGCAGAACUCAGAUCGCCGAUCCCC--------------GAUCUCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA .............(((((..((.(((.((.((((((..((((...--------------))))..)))))).)).)))))..)))))............ ( -20.00) >DroYak_CAF1 84370 86 - 1 -----ACUCAUAUUCCGUU-CACUAAACUGCGAUCUCCGAUCUCC-------GAGCUCAGAUCUCAGAUCUCAGAUCUUUUGAUGGAUAAGCGGCAUUA -----.........(((((-.......(((.(((((..(((((..-------......)))))..))))).)))((((......)))).)))))..... ( -20.40) >consensus ______CUCAUAUUCCGUAUGGCAGAACUCCGAUCUCCGAUCCCC______________GAUCUCCGAUCUCAGAUCUCUUGAUGGAUAAGGCGCAUUA .............(((((..((.(((((((.(((((..((((.................))))..))))).)))))))))..)))))............ (-13.56 = -15.68 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:40 2006