| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,873,400 – 5,873,505 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 5,873,400 – 5,873,505 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.46 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -8.04 |
| Energy contribution | -8.79 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.37 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5873400 105 - 22224390 UGCCGGCGAUAAAUUUUGUGCACAUUUCAGCACAGAGCAGAGAGUCCAGAGAAAAUUGCAGCAAAAUAAGAGCAGCGUGAAAAACACACGCAUCACGCAUAUACA (((..((.......(((((((........)))))))((((....((....))...)))).)).......((...(((((.......))))).))..)))...... ( -22.70) >DroSec_CAF1 78260 89 - 1 UGCCGGCGAUAAAUUUUGUGCACAUUUCAGCACAGA-------------AAAAAAUUGCAGCAAAAUAAGAGCAGCGUGAAAAACACACGCAGCACGCAUAU--- (((..(((((...((((((((........)))))))-------------)....))))).)))........((.(((((.......))))).))........--- ( -25.30) >DroSim_CAF1 80920 91 - 1 UGCCGGCGAUAAAUUUUGUGCACAUUUCAGCACAGA-------------AA-AAAUUGCAGCAAAAUAAGAGCAGCGUGAAAAACACACGCAGCACGCAUAUAUG (((..(((((...((((((((........)))))))-------------).-..))))).)))........((.(((((.......))))).))........... ( -26.00) >DroEre_CAF1 76456 93 - 1 UGCCGGCGAUAAAUUUUGCGCACAUUUCAGCACA------AGAGUCCAGGGAAAAUUGCAGCAAAAUAAAAGUAGCGUGAAAAACACAAGCGGCACGCA------ (((((((.....(((((((((........)).((------(...((....))...)))..))))))).......))(((.....)))...)))))....------ ( -22.00) >DroYak_CAF1 84042 98 - 1 UGCCGGCGAUAAAUUUUGCGCACAUUUCAGCA-A------AGAGUCCAGGGAAAAUUGCAGCAAAAUAAAAGCAGCGUGAAAAACACAAGCAGCACGCAGCUACA (((..(((((...((((((..........)))-)------))..((....))..))))).))).......(((.(((((..............))))).)))... ( -21.14) >DroAna_CAF1 81730 79 - 1 UGCCGGCGAUAAAUUUUGCCCACAUUUCAGCACAG---------UCCG----GAAUGGCAACAGAACCAAA----------AAGUAC---CAGUACAGAUAUAGA (((((((((......)))))...(((((.......---------...)----))))))))...........----------..(((.---...)))......... ( -14.00) >consensus UGCCGGCGAUAAAUUUUGCGCACAUUUCAGCACAG_________UCCA_AGAAAAUUGCAGCAAAAUAAAAGCAGCGUGAAAAACACACGCAGCACGCAUAUA_A (((..((((......))))((........))..........................)))..............(((((..............)))))....... ( -8.04 = -8.79 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006