Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,872,705 – 5,872,803 |
Length | 98 |
Max. P | 0.973564 |
Location | 5,872,705 – 5,872,803 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 75.34 |
Mean single sequence MFE | -33.78 |
Consensus MFE | -14.50 |
Energy contribution | -17.02 |
Covariance contribution | 2.52 |
Combinations/Pair | 1.17 |
Mean z-score | -2.30 |
Structure conservation index | 0.43 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5872705 98 - 22224390 UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG--GCCCAUUUGGCAAAUGGGAAAG---GUGCAUAAGCGUGGGC-----UAGAAA--UAUCGAGAAAAUCGA ...(((((..((((((.((((((((((......))))).--.((((((.....))))))...)---))))))))))...)))-----.))...--..((((.....)))) ( -34.50) >DroSec_CAF1 77609 92 - 1 UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG--GCCCAUU------GUGGGUAAG---GUGCAUAAGCGUGGGC-----UAGAAA--UAUCGACAGAAUCGA ...(((((..((((((.((((((((((......))))).--((((...------..))))..)---))))))))))...)))-----.))...--..((((.....)))) ( -32.70) >DroSim_CAF1 80265 97 - 1 UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG--GCCCAUUUGGCA-GUGGGAAAG---GUGCAUAAGCGUGGGC-----UAGAAA--UAUCGACAGAAUCGA ...(((((..((((((.((((((((((......))))).--.(((((......-)))))...)---))))))))))...)))-----.))...--..((((.....)))) ( -33.40) >DroEre_CAF1 75804 88 - 1 UGACUGCCAAGCUUAUCGCGCCGUCCAAAGGCGGGGAUG--GCGCAUUUGGCA-GUGGGAACG---GUGCAUAUGCGUGGGC-----UAGGUA-----------UAUCGA ....((((.(((((((.(((((((((........)))))--)))).....(((-.((....))---.)))......))))))-----).))))-----------...... ( -37.80) >DroYak_CAF1 83298 95 - 1 UGACUGC--------------CGUCCAAAGGCGUGGAUUCAUUUCCUUUGGCA-GUGGGAAAGCUGCUGCAUAUGCGUGUGCAUCGAUAGGGAGCUAUCGAUAUUAUCGA .....((--------------(.......)))..(((......)))...((((-((......))))))(((((....)))))((((((((....))))))))........ ( -30.50) >consensus UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG__GCCCAUUUGGCA_GUGGGAAAG___GUGCAUAAGCGUGGGC_____UAGAAA__UAUCGACAGAAUCGA .....(((..((((((.((((((((((......))))))...(((((.......))))).......))))))))))...)))............................ (-14.50 = -17.02 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006