Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 766,122 – 766,222 |
Length | 100 |
Max. P | 0.812970 |
Location | 766,122 – 766,222 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.21 |
Mean single sequence MFE | -37.50 |
Consensus MFE | -29.42 |
Energy contribution | -29.98 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.78 |
Structure conservation index | 0.78 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 766122 100 + 22224390 -UUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGUUGCCUUACAGCGGU-----------UCAACAGCGCCUA -.................((((((((.((....))..((((((..((((...(((((((((........)))))))))))))..))))-----------))))))))))... ( -39.20) >DroSec_CAF1 79185 100 + 1 -CUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGUAACAGUGCGCAACAACUGUUGCCUUACAGCGGU-----------UCAACAGCGCCUA -.................((((((((.((....))..((((((..((((...(((((((((........)))))))))))))..))))-----------))))))))))... ( -37.20) >DroSim_CAF1 42145 100 + 1 -CUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGUAACAGUGCGCAACAACUGUUGCCUUACAGCGGU-----------UCAACAGCGCCUA -.................((((((((.((....))..((((((..((((...(((((((((........)))))))))))))..))))-----------))))))))))... ( -37.20) >DroEre_CAF1 94759 112 + 1 CCUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCACGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGCUGCCUUACAGCGACCCAACAGCGUCCCAACAGCGCCUA ..................((((((((.((((((((((...(((........))).....))))))......(((((.....)))))........))))...))))))))... ( -35.00) >DroYak_CAF1 83582 112 + 1 CCUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAGGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGCUGUCUUACAGCGACCCAACAGCCACUCAACAGCGCCUA .......(((((((((.(((((((((..(((.(((..........)))..)))..))))))))).......(((((.....))))).......))))))))).......... ( -38.90) >consensus _CUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGUUGCCUUACAGCGGU___________UCAACAGCGCCUA ..................((((((((...((((((.....(((........))).....))))))....(((((((.....))))))).............))))))))... (-29.42 = -29.98 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:11 2006