Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,856,554 – 5,856,649 |
Length | 95 |
Max. P | 0.883103 |
Location | 5,856,554 – 5,856,649 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -20.47 |
Consensus MFE | -16.76 |
Energy contribution | -16.77 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.11 |
Mean z-score | -2.35 |
Structure conservation index | 0.82 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5856554 95 - 22224390 CCAUAUUAGGAUUCUUUAAAGGAUGUUUUACACUUGUAUCAUUUUUAAAUGUUCAUGUAAGAUAAGAUAUCAUUUGAGCUUAGGAUCUCAGAAUG .(((.((..(((((((((((.(((((((((..(((((((((((....))))...))))))).))))))))).)))))....))))))..)).))) ( -16.90) >DroSec_CAF1 61738 90 - 1 CCAUAUUAGGAUUCUAUAAAGGAUGCAUUAAUAAUGUAUCACUUUUGAUUGUUCAUGUAAGAUAAGAUAUCAAUUGAGCCUAGGAUCCAA----- ........((((((((.(((((((((((.....))))))).)))).....(((((.....((((...))))...))))).))))))))..----- ( -22.30) >DroSim_CAF1 64395 90 - 1 CCAUAUUAGGAUUCUAUAAAGGAUGCAUUAAUAUUGUAUCACUUUUGAUUGUUCAUUUAAGAUAAGAUAUCAAUUGAGCUUAGGAUCCAA----- ........((((((((.((((((((((.......)))))).)))).....(((((.....((((...))))...))))).))))))))..----- ( -22.20) >consensus CCAUAUUAGGAUUCUAUAAAGGAUGCAUUAAUAUUGUAUCACUUUUGAUUGUUCAUGUAAGAUAAGAUAUCAAUUGAGCUUAGGAUCCAA_____ ........((((((((.((((((((((.......)))))).)))).....(((((.....((((...))))...))))).))))))))....... (-16.76 = -16.77 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006