Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,855,362 – 5,855,474 |
Length | 112 |
Max. P | 0.644155 |
Location | 5,855,362 – 5,855,474 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -32.65 |
Consensus MFE | -24.67 |
Energy contribution | -25.43 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.76 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5855362 112 + 22224390 GGCACUCGACUCGUGGGGUCGCAAGAAAUCGGGCAAAACAAGUGCGAUUCCAAGUACCUCGAAUCGAAAUCGAAAUCGAAAUCCCAAUCCCAAUCGAGUCCAUGUCAAGUGG ((((...(((((((((((((....))....(((........((((........)))).((((.(((....)))..))))...)))..)))))..))))))..))))...... ( -34.30) >DroSec_CAF1 60602 107 + 1 GGCACUCGACUCGUGGGGUCGCGGCAAAUCGGGCAAAACAAGUGCGAUUCCAAGUGCCUCC-----AAAUCGAAAUCGAAAUCCCAAUCCCAAUCGAGUCCAUGUCAAGUGG ((((...((((((((((((...(((((((((.((.......)).))))).....))))...-----...(((....))).......))))))..))))))..))))...... ( -33.00) >DroSim_CAF1 63262 107 + 1 GGCACUCGACUCGUGGGGUCGCGGCAAAUCGGGCAAAACAAGUGCGAUUCCAAGUGCCUCC-----AAAUCGAAAUCGAAAUCCCAAUCCCAAUCGAGUCCAUGUCAAGUGG ((((...((((((((((((...(((((((((.((.......)).))))).....))))...-----...(((....))).......))))))..))))))..))))...... ( -33.00) >DroEre_CAF1 59373 102 + 1 GGCACUCGACUCAUGGGGGCGCGUGAAAUCGGGCAAAACAAAUGCGAUUCGAA-----UCG-----AAAUCGAAUUCGAAACCGAAAUCCCAAUCGAGUCCAUGUCAAGUGG ((((...(((((.(((((((.((......)).))..........((.((((((-----(((-----....)).)))))))..))...)))))...)))))..))))...... ( -30.30) >consensus GGCACUCGACUCGUGGGGUCGCGGCAAAUCGGGCAAAACAAGUGCGAUUCCAAGUGCCUCC_____AAAUCGAAAUCGAAAUCCCAAUCCCAAUCGAGUCCAUGUCAAGUGG ((((...((((((((((((.......(((((.((.......)).)))))....................(((....))).......))))))..))))))..))))...... (-24.67 = -25.43 + 0.75)
Location | 5,855,362 – 5,855,474 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -27.29 |
Energy contribution | -28.54 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.77 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5855362 112 - 22224390 CCACUUGACAUGGACUCGAUUGGGAUUGGGAUUUCGAUUUCGAUUUCGAUUCGAGGUACUUGGAAUCGCACUUGUUUUGCCCGAUUUCUUGCGACCCCACGAGUCGAGUGCC .((((((((.(((..(((...(..(((((((((((((((((((.......)))))))...)))))))(((.......))))))))..)...)))..)))...)))))))).. ( -39.00) >DroSec_CAF1 60602 107 - 1 CCACUUGACAUGGACUCGAUUGGGAUUGGGAUUUCGAUUUCGAUUU-----GGAGGCACUUGGAAUCGCACUUGUUUUGCCCGAUUUGCCGCGACCCCACGAGUCGAGUGCC .((((((((.(((..(((....((((((((....(((...((((((-----.(((...))).))))))...))).....))))))))....)))..)))...)))))))).. ( -35.10) >DroSim_CAF1 63262 107 - 1 CCACUUGACAUGGACUCGAUUGGGAUUGGGAUUUCGAUUUCGAUUU-----GGAGGCACUUGGAAUCGCACUUGUUUUGCCCGAUUUGCCGCGACCCCACGAGUCGAGUGCC .((((((((.(((..(((....((((((((....(((...((((((-----.(((...))).))))))...))).....))))))))....)))..)))...)))))))).. ( -35.10) >DroEre_CAF1 59373 102 - 1 CCACUUGACAUGGACUCGAUUGGGAUUUCGGUUUCGAAUUCGAUUU-----CGA-----UUCGAAUCGCAUUUGUUUUGCCCGAUUUCACGCGCCCCCAUGAGUCGAGUGCC .((((((((((((...((.....((..((((.(((((((.((....-----)))-----))))))..(((.......)))))))..))...))...))))..)))))))).. ( -32.80) >consensus CCACUUGACAUGGACUCGAUUGGGAUUGGGAUUUCGAUUUCGAUUU_____CGAGGCACUUGGAAUCGCACUUGUUUUGCCCGAUUUCCCGCGACCCCACGAGUCGAGUGCC .((((((((.(((..(((...(((((((((....(((...((((((................))))))...))).....)))))))))...)))..)))...)))))))).. (-27.29 = -28.54 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:32 2006