Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,850,664 – 5,850,758 |
Length | 94 |
Max. P | 0.703852 |
Location | 5,850,664 – 5,850,758 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -24.08 |
Consensus MFE | -18.09 |
Energy contribution | -17.57 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.15 |
Mean z-score | -1.20 |
Structure conservation index | 0.75 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5850664 94 + 22224390 GGCUAAGAGGCUCUAAUUACAGCUUGUUACCCUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCGCUUUCGCCUUCGCCUUGGAAUGGAGUG ((.(((.(((((........))))).))).))....((.((((((.....))))))-.)).(((((((.((((((....))...))))))))))) ( -27.80) >DroVir_CAF1 74011 73 + 1 GGCUAAGGGGCUCUAAUUACAGCUUGUUAACCUGAUGCACCGGCCACACAGGUCGCAGGCUCACUUUGCUU-------CU--------------- .....((((((.........(((((((..(((((..((....))....))))).)))))))......))))-------))--------------- ( -19.66) >DroPse_CAF1 88401 77 + 1 GGCUAAGAGGCUCUAAUUACAGCUUGUUACCUUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCAACUUCGACUC----------------- ((.(((.(((((........))))).))))).(((.((.((((((.....))))))-.)))))...............----------------- ( -21.60) >DroEre_CAF1 54999 85 + 1 GGCUAAGAGGCUCUAAUUACAGCUUGUUACCCUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCGCCUUCGCCUUCGCCU---------UCG ((((((.(((((........))))).)))....((.((.((((((.....))))))-(((.......)))...))..))))).---------... ( -25.00) >DroAna_CAF1 59571 74 + 1 GGCUAAGAGGCUCUAAUUACAGCUUGUUAACUUGAUGCCAUGGCCACACAGGUCGU-GGCUCACUUCGCCAU------------G-AA------- ((((((.(((((........))))).)))...(((.(((((((((.....))))))-))))))....)))..------------.-..------- ( -28.80) >DroPer_CAF1 77973 77 + 1 GGCUAAGAGGCUCUAAUUACAGCUUGUUACCUUGAUGCAGCGGCCACACAGGUCGU-GGCUCACUUCAACUUCGACUC----------------- ((.(((.(((((........))))).))))).(((.((.((((((.....))))))-.)))))...............----------------- ( -21.60) >consensus GGCUAAGAGGCUCUAAUUACAGCUUGUUACCCUGAUGCAGCGGCCACACAGGUCGU_GGCUCACUUCGCCUUCG_CU__________________ ((.(((.(((((........))))).))).))(((.((..(((((.....)))))...)))))................................ (-18.09 = -17.57 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006