Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,850,374 – 5,850,470 |
Length | 96 |
Max. P | 0.766482 |
Location | 5,850,374 – 5,850,470 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 66.67 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -8.62 |
Energy contribution | -8.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.41 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5850374 96 - 22224390 UGAUAAAUUUCACCUGAGCUUCGCGUCUUGCACUUACAGGUGAUAGAUAGUGAACGCGAUCG-GAGGAGCAAUCGAAAGGAAAA-GCCAAAUAAAUGG ........(((..(((((((((((((((..((((....))))..)))).))))).))..)))-)..)))...((....))....-.(((......))) ( -21.10) >DroPse_CAF1 88148 79 - 1 UGUUCAAUUUCACCUGAACAAAGGGUCUUACAUUUACAGGUGAU----AGCU--CCCUGCCC-CCCGAACCACCGAAAG----A-CCCUCA------- ((((((........)))))).((((((((.......((((.((.----...)--)))))...-..((......)).)))----)-))))..------- ( -21.90) >DroEre_CAF1 54741 86 - 1 UGAUAAAUUUCACCUGAGCCUCGCGUCUUGCACUUACAGGUGAU----GGUGAAGCAGAUCG-GAGUGGCAACCGAAAGCGAAAAACCAAA------- .........(((((((......((.....)).....)))))))(----(((...((...(((-(........))))..)).....))))..------- ( -20.70) >DroPer_CAF1 77712 80 - 1 UGUUCAAUUUCACCUGAACAAAGGGUCUUACAUUUACAGGUGAU----AGCC--CCCUGCCCCCCCGAACCACCGAAAG----A-CCCUCA------- ((((((........)))))).((((((((.......((((.(..----....--)))))......((......)).)))----)-))))..------- ( -20.90) >consensus UGAUAAAUUUCACCUGAACAAAGCGUCUUACACUUACAGGUGAU____AGCG__CCCGACCC_CACGAACAACCGAAAG____A_CCCAAA_______ .........(((((((....................)))))))..............................(....)................... ( -8.62 = -8.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006