Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,850,028 – 5,850,120 |
Length | 92 |
Max. P | 0.953742 |
Location | 5,850,028 – 5,850,120 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 77.17 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -15.25 |
Energy contribution | -15.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.03 |
Structure conservation index | 0.66 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.953742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5850028 92 - 22224390 UAUUUUUUUUUGUUUUUGGUCAGAUUUUCUUUGUUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCGGCGGAAAAGGAAAAAAAC------ ...((((((((.(((((((((((.....)).....((((((((..........)))))))).)))).(((....)))))))).)))))))).------ ( -23.00) >DroSec_CAF1 55259 79 - 1 UUUUUUU------------UCAGAUUUUCUUUGUUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCGGCGGAAAAGGAAA-AAAC------ ..(((((------------((...(((((...(((((((((((..........)))))))).)))..(((....)))))))).))))-))).------ ( -21.70) >DroAna_CAF1 58441 86 - 1 UGUUUUG-----------GCCCUUUUUUUUUUGGUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCAGCGGAAAACAAAA-AAAGCCAUUG ..(((((-----------((((................))))))))).((((((.((.......((((......)))).........-.)).)))))) ( -25.02) >consensus UAUUUUU___________GUCAGAUUUUCUUUGUUUUUGGGCCAAAAACAAUGGGUUCAAACGGCUGCGCUUCGGCGGAAAAGGAAA_AAAC______ ........................((((((((...((((((((..........))))))))......(((....)))..))))))))........... (-15.25 = -15.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:28 2006