Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,835,116 – 5,835,213 |
Length | 97 |
Max. P | 0.930100 |
Location | 5,835,116 – 5,835,213 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -23.74 |
Consensus MFE | -11.26 |
Energy contribution | -9.90 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.40 |
Mean z-score | -2.70 |
Structure conservation index | 0.47 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5835116 97 - 22224390 CCCUCCAA----CAACUGAAUACAU--AU---UAUAUAUCUACAUAUAUGUACGCACGAUAUGUACAUAUAUGAAACCGCACCGGACGGAGUCGCGUCAUUAGCCU ..((((..----.............--..---..........((((((((((((.......))))))))))))...(((...)))..))))..((.......)).. ( -21.50) >DroSec_CAF1 40501 96 - 1 CCCUCCAA----CAACUAAAUACAU--AUA----UGAAUCUACAUAUAUGUACGCACGAUAUGUGCAUAAAUGAAACCACACCGGACGGAGUCGCGUCAUUAGCCU ..((((..----((......(((((--(((----((......)))))))))).((((.....)))).....))...((.....))..))))..((.......)).. ( -22.20) >DroSim_CAF1 43630 100 - 1 CCCUCCAA----CAACUAAAUACAU--AUAUGUAUGAAUCUACAUAUAUGUACGCACGAUAUGUGCAUAAAUGAAACCACACCGGACGGAGUCGCGUCAUUAGCCU ..((((..----((......(((((--(((((((......)))))))))))).((((.....)))).....))...((.....))..))))..((.......)).. ( -24.90) >DroEre_CAF1 39866 96 - 1 CCCUCCAA----CAACUAAAUAGG--CAUCUGCAUAUAUCUACAUAUAUGUACGCACGAUAUGUG----UAGGAAACCGCGCCGGACGGAGUCACGUCAUUAGCCU ........----.........(((--(.((((((((((((((((....)))).....))))))))----))))...........((((......))))....)))) ( -25.40) >DroYak_CAF1 41067 102 - 1 CCCUUUAAAUCUAAACUAAAUACAUAUAUCUACAUAUAAGUACGUAGAUAUAUGUACGUUAUGUA----UUGGAAACCGCACCGGACGGAGUCGCGUCAUUAGCCU .........((((((((((.(((((((((((((.((....)).)))))))))))))..))).)).----)))))....((....((((......))))....)).. ( -24.70) >consensus CCCUCCAA____CAACUAAAUACAU__AUAU_CAUAUAUCUACAUAUAUGUACGCACGAUAUGUGCAUAUAUGAAACCGCACCGGACGGAGUCGCGUCAUUAGCCU ..((((..................................(((((((.((....))..)))))))...........((.....))..))))............... (-11.26 = -9.90 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:25 2006