Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,834,554 – 5,834,660 |
Length | 106 |
Max. P | 0.987526 |
Location | 5,834,554 – 5,834,660 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.73 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -28.05 |
Energy contribution | -28.68 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.08 |
Mean z-score | -2.93 |
Structure conservation index | 0.86 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5834554 106 + 22224390 UCAACACCCUGGUGGACCUACCACCAGCUCCCAAAAGUGGUAAGUAAUUCGAGCCACGAGCCCACUUUUGGCUACCACCGAUUGCACCACCC-AUCGUAACUAGAAC ...((...(((((((.....))))))).........(((((..((((((..(((((.(((....))).)))))......)))))))))))..-...))......... ( -29.20) >DroSec_CAF1 39900 107 + 1 UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGACACGAGUCCGCUUUUGGGUACCACCGAUUGCACCACCCAAUCGUAACUAGAAC ........(((((((.....)))))))..(((((((((((...((..........))....)))))))))))......((((((.......)))))).......... ( -32.60) >DroSim_CAF1 43025 107 + 1 UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGACACGAGCCCACUUUUGGGUACCACCGAUUGCACCACCCAAUCGUAACUAGAAC ........(((((((.....)))))))..(((((((((((...((..........))....)))))))))))......((((((.......)))))).......... ( -32.30) >DroEre_CAF1 39240 104 + 1 UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGCCACG-GCCCACUUUUGGGCAC-GUCGAUUGCUCCAUCC-GGCGCAACUAGAAC ((.((...(((((((.....)))))))..(((((((((((........(((.....))-).)))))))))))...-)).))((((.((....-)).))))....... ( -35.80) >consensus UCAACACCCUGGUGGACCUGCCACCAGCUCCCAAAAGUGGUAAGUAAUCCGAGACACGAGCCCACUUUUGGGUACCACCGAUUGCACCACCC_AUCGUAACUAGAAC ........(((((((.....)))))))..(((((((((((...((..........))....)))))))))))......((((((.......)))))).......... (-28.05 = -28.68 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:24 2006