Locus 2150

Sequence ID X_DroMel_CAF1
Location 5,824,067 – 5,824,168
Length 101
Max. P 0.578893
window3489

overview

Window 9

Location 5,824,067 – 5,824,168
Length 101
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.67
Mean single sequence MFE -41.08
Consensus MFE -26.46
Energy contribution -26.68
Covariance contribution 0.23
Combinations/Pair 1.39
Mean z-score -1.23
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.578893
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5824067 101 - 22224390
UUCCGUGGCAGAGUGAUGGUGGCGUAGGUGGUACCCCUUUCUGGUGCCAAUCCGGAGUCCUCCGAUUGCGCCGGACUCAUCGCCCGGUCAACUGCAAGA----------------AA
.......((((..((((.(.((((..(((((((((.......)))))))..)).((((((..((....))..))))))..))))).)))).))))....----------------.. ( -40.70)
>DroVir_CAF1 39726 114 - 1
UUGCGCGGCAGCGUGAUCGUUGCAUAGGUGGUGCCCCGUUCCGGUGCCAGGCCGGAGUCUUCGGAUUGCGCGGGGCUCAUCGCGCGGUCAACUGCAAGAGAUGUGCGAGA---AAAA
(((((((((((((....))))))...(((((.(((((((((((((.....))))))(((....)))...))))))))))))..((((....))))......)))))))..---.... ( -53.30)
>DroGri_CAF1 38164 112 - 1
UUGCGUGGCAACGUGAUCGUUGUAUAUGUUGUGCCCCUUUCCGGUGCCAGUCCAGAGUCUUCCGACUGUGCCGGGCUCAUCGCACGUUCAACUGCAAAAUA-----GAAAACCAAAA
((((...((((((....))))))...((.(((((.....(((((..(.((((..(......).)))))..)))))......)))))..))...))))....-----........... ( -31.30)
>DroWil_CAF1 32780 101 - 1
UUGCGGGGCAGUGUUAUUGUUGCAUAGGUUGUGCCUCGUUCCGGGGCAAGGCCCGAAUCCUCGGACUGCGCGGGACUCAUUGCGCGGUCAACUGCAAAG----------------AA
((((((.(((..(....)..)))...(((..(((((((...)))))))..)))(((....)))((((((((((......))))))))))..))))))..----------------.. ( -42.60)
>DroMoj_CAF1 37108 101 - 1
UUGCGUGGCAGCGUGAUCGUUGCAUAGGUUGUGCCGCGUUCCGGUGCCAGUCCAGAGUCCUCGGAUUGCGCGGGGCUCAUCGCUCGGUCAACUGCGA----------------AUGA
((((...((((((....))))))...(((((.((((.(((((.((((.(((((.((....))))))))))).)))......)).)))))))))))))----------------.... ( -39.00)
>DroPer_CAF1 47038 101 - 1
UUGCGUGGCAGUGUGAUGGUGGCAUAGGUGGUGCCACGUUCCGGUGCCAGUCCAGAGUCCUCCGACUGUGCUGGGCUCAUGGCUCGAUCGACUGCAAUA----------------GA
.......(((((.((((.(((((((.....)))))))....(((.((((((((((((((....))))...))))))...))))))))))))))))....----------------.. ( -39.60)
>consensus
UUGCGUGGCAGCGUGAUCGUUGCAUAGGUGGUGCCCCGUUCCGGUGCCAGUCCAGAGUCCUCCGACUGCGCGGGGCUCAUCGCGCGGUCAACUGCAAAA________________AA
.......((((..((((((.(((...(((((((((.......)))))))..)).((((((............))))))...))))))))).))))...................... (-26.46 = -26.68 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:23 2006