Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 765,526 – 765,646 |
Length | 120 |
Max. P | 0.999806 |
Location | 765,526 – 765,646 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.82 |
Mean single sequence MFE | -39.24 |
Consensus MFE | -35.50 |
Energy contribution | -35.94 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.68 |
Structure conservation index | 0.90 |
SVM decision value | 4.13 |
SVM RNA-class probability | 0.999806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 765526 120 + 22224390 AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC ((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20) >DroSec_CAF1 78581 120 + 1 AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC ((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20) >DroSim_CAF1 41541 120 + 1 AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC ((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20) >DroEre_CAF1 94175 112 + 1 AGGCUGCGAUCAAGGAUCUGGCGCCAGA--ACACAACAACUCACCUGUCCCUGUCUAACAGCUGCUAGUGGUUGUUGCUGGCUCU------CUCUUCGUCAGCUCCAUCAUCGCCGUCUC ((((.(((((...(((.((((((((((.--...(((((((.(((..((..(((.....)))..))..)))))))))))))))...------......))))).)))...))))).)))). ( -42.50) >DroYak_CAF1 82965 118 + 1 AGGCUGCGAUCAAGGAUCUGGCGCCAGA--ACACAACAACUCACCUGUCCCCGUCUAACAGCUGCUAGUGGUUGUUGCUGGCUCUCGCUCCCUCUUCGUCAGCUCCAUCAUUGCCGUCUC ((((.(((((...(((.((((((((((.--...(((((((.(((..((..(.(.....).)..))..)))))))))))))))....(....).....))))).)))...))))).)))). ( -36.10) >consensus AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC ((((.(((((...(((.((((((..(((...(((((((((.(((..((..((.......))..))..)))))))))).))((....))....))).)))))).)))...))))).)))). (-35.50 = -35.94 + 0.44)
Location | 765,526 – 765,646 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.82 |
Mean single sequence MFE | -42.22 |
Consensus MFE | -35.58 |
Energy contribution | -36.58 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.84 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 765526 120 - 22224390 GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU ......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50) >DroSec_CAF1 78581 120 - 1 GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU ......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50) >DroSim_CAF1 41541 120 - 1 GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU ......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50) >DroEre_CAF1 94175 112 - 1 GAGACGGCGAUGAUGGAGCUGACGAAGAG------AGAGCCAGCAACAACCACUAGCAGCUGUUAGACAGGGACAGGUGAGUUGUUGUGU--UCUGGCGCCAGAUCCUUGAUCGCAGCCU ......(((((.(.(((.(((.((.....------(((((..((((((((((((.((..(((.....))).).).)))).))))))))))--)))..)).))).))).).)))))..... ( -39.10) >DroYak_CAF1 82965 118 - 1 GAGACGGCAAUGAUGGAGCUGACGAAGAGGGAGCGAGAGCCAGCAACAACCACUAGCAGCUGUUAGACGGGGACAGGUGAGUUGUUGUGU--UCUGGCGCCAGAUCCUUGAUCGCAGCCU .....(((..((((.(((((.....))..((.((.((((((((((((.(((.(((((....)))))..(....).)))..))))))).))--))).)).)).....))).))))..))). ( -44.50) >consensus GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU ......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... (-35.58 = -36.58 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:10 2006