Locus 215

Sequence ID X_DroMel_CAF1
Location 765,526 – 765,646
Length 120
Max. P 0.999806
window325 window326

overview

Window 5

Location 765,526 – 765,646
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.82
Mean single sequence MFE -39.24
Consensus MFE -35.50
Energy contribution -35.94
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -2.68
Structure conservation index 0.90
SVM decision value 4.13
SVM RNA-class probability 0.999806
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 765526 120 + 22224390
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20)
>DroSec_CAF1 78581 120 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20)
>DroSim_CAF1 41541 120 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((......((((((.(((..((..((.......))..))..)))))))))((..((....))..))))).)))))).)))...))))).)))). ( -39.20)
>DroEre_CAF1 94175 112 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGA--ACACAACAACUCACCUGUCCCUGUCUAACAGCUGCUAGUGGUUGUUGCUGGCUCU------CUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((((((.--...(((((((.(((..((..(((.....)))..))..)))))))))))))))...------......))))).)))...))))).)))). ( -42.50)
>DroYak_CAF1 82965 118 + 1
AGGCUGCGAUCAAGGAUCUGGCGCCAGA--ACACAACAACUCACCUGUCCCCGUCUAACAGCUGCUAGUGGUUGUUGCUGGCUCUCGCUCCCUCUUCGUCAGCUCCAUCAUUGCCGUCUC
((((.(((((...(((.((((((((((.--...(((((((.(((..((..(.(.....).)..))..)))))))))))))))....(....).....))))).)))...))))).)))). ( -36.10)
>consensus
AGGCUGCGAUCAAGGAUCUGGCGCCAGAAAACACAACAACUCACCUGUCCCUCUCUAACAGCUGCUAGUGGUUGUUGGUGGCUUUCGCUCCCUCUUCGUCAGCUCCAUCAUCGCCGUCUC
((((.(((((...(((.((((((..(((...(((((((((.(((..((..((.......))..))..)))))))))).))((....))....))).)))))).)))...))))).)))). (-35.50 = -35.94 +   0.44) 

alignment

Postscript

secondary structure

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dotplot

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Window 6

Location 765,526 – 765,646
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -42.22
Consensus MFE -35.58
Energy contribution -36.58
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.84
SVM decision value 0.57
SVM RNA-class probability 0.785720
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 765526 120 - 22224390
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50)
>DroSec_CAF1 78581 120 - 1
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50)
>DroSim_CAF1 41541 120 - 1
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... ( -42.50)
>DroEre_CAF1 94175 112 - 1
GAGACGGCGAUGAUGGAGCUGACGAAGAG------AGAGCCAGCAACAACCACUAGCAGCUGUUAGACAGGGACAGGUGAGUUGUUGUGU--UCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.....------(((((..((((((((((((.((..(((.....))).).).)))).))))))))))--)))..)).))).))).).)))))..... ( -39.10)
>DroYak_CAF1 82965 118 - 1
GAGACGGCAAUGAUGGAGCUGACGAAGAGGGAGCGAGAGCCAGCAACAACCACUAGCAGCUGUUAGACGGGGACAGGUGAGUUGUUGUGU--UCUGGCGCCAGAUCCUUGAUCGCAGCCU
.....(((..((((.(((((.....))..((.((.((((((((((((.(((.(((((....)))))..(....).)))..))))))).))--))).)).)).....))).))))..))). ( -44.50)
>consensus
GAGACGGCGAUGAUGGAGCUGACGAAGAGGGAGCGAAAGCCACCAACAACCACUAGCAGCUGUUAGAGAGGGACAGGUGAGUUGUUGUGUUUUCUGGCGCCAGAUCCUUGAUCGCAGCCU
......(((((.(.(((.(((.((.(((((..((....))..)).(((((.(((..((.(((((.......))))).))))).)))))....)))..)).))).))).).)))))..... (-35.58 = -36.58 +   1.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:10 2006