Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,820,017 – 5,820,114 |
Length | 97 |
Max. P | 0.640759 |
Location | 5,820,017 – 5,820,114 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 83.51 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -18.62 |
Energy contribution | -20.38 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.72 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5820017 97 - 22224390 UUAGAACUAAGCUGUUGUGUACUUUACAUUUGCUUCCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA ......((.((((((.((((......((((((......)))))).((((((.....))))))....)))))))))).)).((((....))))..... ( -23.50) >DroSec_CAF1 25537 97 - 1 UUAGAACUGAGCUGUUGUGUACUUCAAAUUUGCUUUCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA ......(((((((((.((((.......(((((......)))))..((((((.....))))))....))))))))))))).((((....))))..... ( -27.20) >DroSim_CAF1 27430 97 - 1 UUAGAACUGAGCUGUUGUGUACUUCAAAUUUGCUUUCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA ......(((((((((.((((.......(((((......)))))..((((((.....))))))....))))))))))))).((((....))))..... ( -27.20) >DroEre_CAF1 25213 82 - 1 UUAGAACUGAGGUGUAGUAAACUGCACUCU---------------UGCUGACUUUUUCAUUAAGGGCAUCGCAGUUCAGGGCGUGGAAAUGCGAGAA ...((((((.(((((((....)))).((((---------------((.(((.....))).)))))).))).))))))...((((....))))..... ( -25.20) >consensus UUAGAACUGAGCUGUUGUGUACUUCAAAUUUGCUUUCCCAAGUGCUGAUGACUUUUUCAUUAAUGGACACGCAGUUCAGGGCGUGAAAAUGCGAGAA ......(((((((((.((((...........((((....))))..((((((.....))))))....))))))))))))).((((....))))..... (-18.62 = -20.38 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:22 2006