Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,818,182 – 5,818,280 |
Length | 98 |
Max. P | 0.794903 |
Location | 5,818,182 – 5,818,280 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.53 |
Mean single sequence MFE | -13.86 |
Consensus MFE | -9.85 |
Energy contribution | -9.47 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.15 |
Mean z-score | -1.93 |
Structure conservation index | 0.71 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5818182 98 + 22224390 CAUAACCGCCAGCAUUUGCCCCAUCCCCCAUUCCUACAUACUCGCAUAUCUCAUCCUAUGAAUAA-----------AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU .....(((((((................................((((........))))..(((-----------(......)))))))))))............... ( -11.50) >DroSec_CAF1 23746 96 + 1 CAUAACCGCCAGCAUUUGCCC--UACCCCAUUCCUACAUACUCGUAUAUCUCAUCCUAUGAAUAA-----------AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU .....(((((((.........--..................(((((..........))))).(((-----------(......)))))))))))............... ( -11.70) >DroSim_CAF1 25662 96 + 1 CAUAACCGCCAGAAUUUGCCC--UCCCCCAUUCCUACACACUCGCAUAUCUCAUCCUAUGAAUAA-----------AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU .....(((((((.........--.....................((((........))))..(((-----------(......)))))))))))............... ( -12.20) >DroYak_CAF1 24329 106 + 1 CAUAACCGCCAGCAUUUGCCC--UUCCCACUUCUUGCAUAUUCACAUAUG-AAUAAUGUGAAUAAUUCACAUACAUAUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU .....(((((((....(((..--............)))(((((((((...-....))))))))).......................)))))))............... ( -20.04) >consensus CAUAACCGCCAGCAUUUGCCC__UCCCCCAUUCCUACAUACUCGCAUAUCUCAUCCUAUGAAUAA___________AUAUCUUUUUACUGGUGGCCCUUUAAUUGAAUU .....(((((((................................((((........)))).................((......)))))))))............... ( -9.85 = -9.47 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:19 2006