Locus 2146

Sequence ID X_DroMel_CAF1
Location 5,817,413 – 5,817,506
Length 93
Max. P 0.509996
window3483

overview

Window 3

Location 5,817,413 – 5,817,506
Length 93
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 70.91
Mean single sequence MFE -35.78
Consensus MFE -10.49
Energy contribution -12.43
Covariance contribution 1.94
Combinations/Pair 1.17
Mean z-score -3.02
Structure conservation index 0.29
SVM decision value -0.05
SVM RNA-class probability 0.509996
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5817413 93 + 22224390
CAGG--GGGUUAAAGGGGUUUCAGCAACCCCUCCGAAA---UCGGUAUA-----------UGAAAACAGUGAAAUAUUCAUUUAGUUGGCACCUAAGGUGC--------GCCCCUUA
.(((--((((...(((((((.....)))))))(((...---.)))....-----------....((((((((.....)))))..))).(((((...)))))--------))))))). ( -31.00)
>DroSec_CAF1 22986 112 + 1
CAGG--GGUUUACAGGGGGUUCAGCAACCCCUCCGAAA---UUAGUUUGACUUUCAUUAUAGAAAACAGUGAAAUAUUUAUCUAGUUGGCACCUUUGGUGAACCCCCACUCCCCCUU
.(((--((......(((((((((.(((.....((((..---.(((......(((((((.........))))))).......))).)))).....))).)))))))))....))))). ( -35.32)
>DroSim_CAF1 24296 111 + 1
CAGG--GGUUUACAGGGGGUUCAGCAACCCCUCCGAAA---UUGGUAUGAUUUCGAUUUUAGAAAACAGUGAAAUAUUUAUCUAGUUGGCACCU-UGGUGAACCCCCUCUCCCCCUU
.(((--((.....((((((((((.(((.....((((..---..((((..((((((.(((....)))...))))))...))))...))))....)-)).))))))))))...))))). ( -38.10)
>DroEre_CAF1 22713 112 + 1
CGCGGGGGCUUACAGGGGGUUCAGCAACCCCAUCGGAAUGAUUGCUAUGAUUGUCAUUGUUCAAAACAGUGAAUUAUUCAUCUAGCUGGCACCUUAGGC---CCC--UUUGGAAAGG
((.(((((((((...((((((....))))))...((..((...(((((((...(((((((.....))))))).....)))..))))...)))).)))))---)))--).))...... ( -38.70)
>consensus
CAGG__GGUUUACAGGGGGUUCAGCAACCCCUCCGAAA___UUGGUAUGAUUUUCAUU_UAGAAAACAGUGAAAUAUUCAUCUAGUUGGCACCUUAGGUGA_CCC__UCUCCCCCUU
......(((((((..(((..(((((.......((((.....)))).......................((((.....))))...)))))..)))...)))))))............. (-10.49 = -12.43 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:18 2006