Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,811,101 – 5,811,197 |
Length | 96 |
Max. P | 0.964495 |
Location | 5,811,101 – 5,811,197 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 89.24 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -25.80 |
Energy contribution | -26.13 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.95 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5811101 96 + 22224390 UCACGCAGCUAGAGCUAGAGCUGGAAAAACAUCGAUGCUCGUCGCCGUCGAUGUUUUCGAUGUUUUAUGGCGAGAACAUUGACUAUCGAAAAAUAA ((...(((((........)))))((.((((((((((((.....).)))))))))))((((((((((......))))))))))...))))....... ( -27.60) >DroSec_CAF1 16670 94 + 1 UCACGCAGCUAGAGCUAGAGCUGGAAAAACAUCGAUGCUUACUGCCGUCGAUGUUUUCGAUGUUUUAUGGGGAGAACAUUGACUAUCGAA--AUAA ((...(((((........)))))((.((((((((((((.....).)))))))))))((((((((((......))))))))))...)))).--.... ( -28.20) >DroSim_CAF1 17175 90 + 1 UCACGCAGCUA------GAGCUGGAAAAACAGCGAUGCUUUCCACCGUCGAUGUUUUCGAUGUUUUAUGGCGAGAACAUUGACUAUCGAAAAAUAA ....(((....------..((((......))))..)))((((....(((((((((((((...........)))))))))))))....))))..... ( -26.10) >consensus UCACGCAGCUAGAGCUAGAGCUGGAAAAACAUCGAUGCUUACCGCCGUCGAUGUUUUCGAUGUUUUAUGGCGAGAACAUUGACUAUCGAAAAAUAA ((...(((((........)))))((.(((((((((((........)))))))))))((((((((((......))))))))))...))))....... (-25.80 = -26.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:14 2006