Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,802,453 – 5,802,547 |
Length | 94 |
Max. P | 0.847548 |
Location | 5,802,453 – 5,802,547 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 72.22 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -21.64 |
Energy contribution | -22.25 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.15 |
Mean z-score | -1.23 |
Structure conservation index | 0.68 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5802453 94 + 22224390 ACAUCUGUUCGGGCGCUUUAGUGGCGCCCUCUGUUGUGCUAACCGUCACUAGCUGCAUCUUCAGGUGAGUUGAGUAAAAUUUGUAUCUUUUUA------U .((((((...(((((((.....)))))))..(((...((((........)))).)))....))))))..........................------. ( -26.00) >DroPse_CAF1 35464 98 + 1 ACAUCUGCUCGGGGGCCCUGGUGGCGCCCUCGGUGGUGCUCACGGUGAGCAGCUGCCUCUACAGGUGAGUGCAGGGCCAG--GAGUCCUGUCAGAGGGGA .((((((...((((((((....)).))))))((..((((((.....))))).)..))....))))))...(((((((...--..)))))))......... ( -44.90) >DroSec_CAF1 7959 94 + 1 ACAUCUGUUCGGGCGCUUUAGUGGCGCCCUCUGUUGUGCUGACCGUGACUAGCUGCAUCUUCAGGUGAGAUUUGUUAAAUUUGUAUAUUUUCA------U .((((((...(((((((.....)))))))..(((...((((........)))).)))....))))))..........................------. ( -25.70) >DroSim_CAF1 8458 94 + 1 ACAUCUGUUCGGGCGCUUUAGUGGCGCCAUCUGUUGUGCUGACCGUCACUAGCUGCAUCUUCAGGUGAGAUUUGUUACAUUUGUAUCUUUUCA------U .((((((....((((((.....))))))...(((...((((........)))).)))....)))))).((...(.(((....))).)...)).------. ( -24.30) >DroEre_CAF1 7609 72 + 1 ACAUCUGCUCGGGCGCCUUAGUGGCGCCCUCUGUUGUGCUGACCGUCAGUAGCUGCAUCUUCAGGUAAGGAU---------------------------- ..(((((...(((((((.....)))))))..(((.((((((.....))))).).)))....)))))......---------------------------- ( -26.80) >DroPer_CAF1 23339 98 + 1 ACAUCUGCUCGGGGGCCCUGGUGGCGCCCUCGGUGGUGCUCACGGUGAGCAGCUGCGUCUACAGGUGAGUGCAGGGCCAG--GAGUCCUGUCAGAGGGGA .((((((..(((((((((....)).)))))))(..((((((.....))))).)..).....))))))...(((((((...--..)))))))......... ( -43.60) >consensus ACAUCUGCUCGGGCGCCUUAGUGGCGCCCUCUGUUGUGCUGACCGUCACUAGCUGCAUCUUCAGGUGAGUUUAGUGACAU__GUAUCUUUUCA______U .((((((...(((((((.....)))))))..(((...((((........)))).)))....))))))................................. (-21.64 = -22.25 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:09 2006