Locus 214

Sequence ID X_DroMel_CAF1
Location 762,367 – 762,474
Length 107
Max. P 0.521079
window324

overview

Window 4

Location 762,367 – 762,474
Length 107
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 83.91
Mean single sequence MFE -30.54
Consensus MFE -24.36
Energy contribution -24.15
Covariance contribution -0.22
Combinations/Pair 1.14
Mean z-score -1.53
Structure conservation index 0.80
SVM decision value -0.02
SVM RNA-class probability 0.521079
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 762367 107 - 22224390
AUUCAAAGUGCAUUUACCGCUGGCGCCCCCAGUGGACCCGUCAUUCCCUGCCUUUCC-GCUUUUC-CGCUUCUCCGCCCCCUGUGGGCUCUACGGGUUGCUGCCAACAC
.......(.(((....(((((((.....)))))))((((((................-((.....-.))......((((.....))))...))))))...))))..... ( -30.10)
>DroSec_CAF1 77192 99 - 1
AUUCAAAGUGCAUUUACCGCUGGCGCCCCCAGUGGACCCGUCUUUCCCCGCCUUUCC-GGUUUUC---------CGCCCCCUGUGGGCUCUAUGGGUUGCUGCCAACAC
.......(.(((....(((((((.....)))))))((((((.....(((((.....(-((....)---------))......)))))....))))))...))))..... ( -30.90)
>DroEre_CAF1 92346 99 - 1
AUUCAAAGUGCAUUUACCGCUGGGGCCCCCAGUGGACCCGCCGUUCCCCCACUUUCCCCGCUUUCC---------G-CCCCUUUGGGGUCUACGGGUUUCUGCCAACAC
.......(.(((....((((((((...))))))))(((((..(...(((((........((.....---------)-).....))))).)..)))))...))))..... ( -30.62)
>consensus
AUUCAAAGUGCAUUUACCGCUGGCGCCCCCAGUGGACCCGUCAUUCCCCGCCUUUCC_GGUUUUC_________CGCCCCCUGUGGGCUCUACGGGUUGCUGCCAACAC
.......(.(((....(((((((.....)))))))((((((.....(((((...............................)))))....))))))...))))..... (-24.36 = -24.15 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006