Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,802,300 – 5,802,413 |
Length | 113 |
Max. P | 0.961340 |
Location | 5,802,300 – 5,802,413 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -43.57 |
Consensus MFE | -26.70 |
Energy contribution | -28.37 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.17 |
Mean z-score | -2.54 |
Structure conservation index | 0.61 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5802300 113 + 22224390 GUGAUUUGGCCGCCAAACGUGGUAUUGGCCUGGCCGAAAUGGAUGCCAUUGCAG-CUGAAAAUGGAAAGGAAGGAUUUCAGCUGAAGAUGGUGGCUCCACACCAGGCAUCCAUA ....((((((((((((........)))))..)))))))(((((((((....(((-((((((..............)))))))))....(((((......)))))))))))))). ( -50.44) >DroSec_CAF1 7806 113 + 1 GUGAUUUGGCUGCCAAACGUGGUAUUGGCCUGGCCGAAAUGGAUGCCAUUGCGG-CUCCAAGUGGAAAGGAUGGUUUCCAGCUGGAGAUGAUGGCUCCACACCAGGCAUCCAUA ....((((((((((((........)))))..)))))))(((((((((....((.-(((((..((((((......))))))..))))).)).(((.......)))))))))))). ( -45.90) >DroSim_CAF1 8305 113 + 1 GUGAUUUGGCCGCCAAACGUGGUAUUGGCCUGGCCGAAAUGGAUGCCAUUGCGG-CUCCAAGUGGAAAGGAUGGUUUCCAGCUGGAGAUGAUGGCUCCACACCAGGCAUCCAUA ....((((((((((((........)))))..)))))))(((((((((....((.-(((((..((((((......))))))..))))).)).(((.......)))))))))))). ( -47.60) >DroEre_CAF1 7456 113 + 1 GCGAUUUGGCCGCCAAACGUGGUAUUAGCCUGGCCGAAAUGGAUGCCAUUGCAG-GGCCAACGGCACAGGGACGAUUCCAGCUGGAAAAGAUCGCUCCGCACCAGGCAUCCAUA ....(((((((((((....))))........)))))))(((((((((..(((..-.(((...)))...((..(((((((....)))....))))..)))))...))))))))). ( -43.40) >DroYak_CAF1 8123 113 + 1 GUGAUUUGGCCGCCAAACGUGGUAUUAGCCUGGCCGAAAUGGAUGCCAUUGCAG-CGCCAACGGGUAAGGAACGAUUCCAGCUGAAUAUGUUGGCUCCACACCAGGCAUCCAUA ....(((((((((((....))))........)))))))(((((((((....(((-((((....)))..(((.....))).)))).......(((.......)))))))))))). ( -39.90) >DroAna_CAF1 9036 107 + 1 GCGAUUUGGCCGCUCAGCGUGGCAUUAGCCUGUCCGAAAUGGAGGCUAUCUCCGGCGAUCACGGAUUCGGGA-------AUACGAAAAUGAGCGCCCCCUACCAGGCAUCCAUC ........(((((.....)))))....(((((........((((.....))))((((.(((....((((...-------...))))..))).))))......)))))....... ( -34.20) >consensus GUGAUUUGGCCGCCAAACGUGGUAUUAGCCUGGCCGAAAUGGAUGCCAUUGCAG_CGCCAACGGGAAAGGAAGGAUUCCAGCUGAAGAUGAUGGCUCCACACCAGGCAUCCAUA ....((((((((((((........)))))..)))))))(((((((((.....................(((.....)))(((((.......)))))........))))))))). (-26.70 = -28.37 + 1.67)
Location | 5,802,300 – 5,802,413 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -44.60 |
Consensus MFE | -27.42 |
Energy contribution | -28.98 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.21 |
Mean z-score | -3.43 |
Structure conservation index | 0.61 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5802300 113 - 22224390 UAUGGAUGCCUGGUGUGGAGCCACCAUCUUCAGCUGAAAUCCUUCCUUUCCAUUUUCAG-CUGCAAUGGCAUCCAUUUCGGCCAGGCCAAUACCACGUUUGGCGGCCAAAUCAC .((((((((((((((......)))))....(((((((((..............))))))-)))....)))))))))...((((..(((((........)))))))))....... ( -45.84) >DroSec_CAF1 7806 113 - 1 UAUGGAUGCCUGGUGUGGAGCCAUCAUCUCCAGCUGGAAACCAUCCUUUCCACUUGGAG-CCGCAAUGGCAUCCAUUUCGGCCAGGCCAAUACCACGUUUGGCAGCCAAAUCAC .(((((((((...(((((.........((((((.((((((......)))))).))))))-)))))..)))))))))...(((...(((((........))))).)))....... ( -47.40) >DroSim_CAF1 8305 113 - 1 UAUGGAUGCCUGGUGUGGAGCCAUCAUCUCCAGCUGGAAACCAUCCUUUCCACUUGGAG-CCGCAAUGGCAUCCAUUUCGGCCAGGCCAAUACCACGUUUGGCGGCCAAAUCAC .(((((((((...(((((.........((((((.((((((......)))))).))))))-)))))..)))))))))...((((..(((((........)))))))))....... ( -49.50) >DroEre_CAF1 7456 113 - 1 UAUGGAUGCCUGGUGCGGAGCGAUCUUUUCCAGCUGGAAUCGUCCCUGUGCCGUUGGCC-CUGCAAUGGCAUCCAUUUCGGCCAGGCUAAUACCACGUUUGGCGGCCAAAUCGC .(((((((((.((..(((..((((....(((....)))))))..)).)..))((((...-...)))))))))))))...((((..(((((........)))))))))....... ( -45.20) >DroYak_CAF1 8123 113 - 1 UAUGGAUGCCUGGUGUGGAGCCAACAUAUUCAGCUGGAAUCGUUCCUUACCCGUUGGCG-CUGCAAUGGCAUCCAUUUCGGCCAGGCUAAUACCACGUUUGGCGGCCAAAUCAC .(((((((((...((..(.((((((..........(((.....)))......)))))).-)..))..)))))))))...((((..(((((........)))))))))....... ( -44.09) >DroAna_CAF1 9036 107 - 1 GAUGGAUGCCUGGUAGGGGGCGCUCAUUUUCGUAU-------UCCCGAAUCCGUGAUCGCCGGAGAUAGCCUCCAUUUCGGACAGGCUAAUGCCACGCUGAGCGGCCAAAUCGC ..(((.(((..(((..((((((.((((.((((...-------...))))...)))).)))).....((((((((.....)))..)))))...))..)))..))).)))...... ( -35.60) >consensus UAUGGAUGCCUGGUGUGGAGCCAUCAUCUCCAGCUGGAAUCCUUCCUUUCCAGUUGGAG_CUGCAAUGGCAUCCAUUUCGGCCAGGCCAAUACCACGUUUGGCGGCCAAAUCAC .(((((((((...((((((((...........)))(((.....)))..............)))))..)))))))))...((((..(((((........)))))))))....... (-27.42 = -28.98 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:08 2006