Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,801,008 – 5,801,119 |
Length | 111 |
Max. P | 0.679046 |
Location | 5,801,008 – 5,801,119 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -16.69 |
Energy contribution | -16.30 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -2.33 |
Structure conservation index | 0.57 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5801008 111 - 22224390 -GUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCUUUCGCCAAUGAUCGUUCAAUUGCAUUUCGAUGCAAGAUAU--CCGUAACACAA -(((((.......((((((((..((((((..((((((.((((((....)))))).))...)))).....(((....)))..))))))..))))))))....--..))))).... ( -28.12) >DroPse_CAF1 34202 110 - 1 -AGCACUUACUCGUCUGCAUCUCGGUGCACAGGAAUGCAAAGAUCAGUAUCUUCAUGAUCUUGCGAUAAUGAUCGUUCAGCUGCAUUUCGAUCGAUGUU-U--AAGUCGCACAA -.(((((((..(((((((((....)))))..(((((((((((((((.........)))))))(((((....))))).....))))))))....))))..-)--)))).)).... ( -36.10) >DroSec_CAF1 6535 114 - 1 AGUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCCUUCGCCAAUGAUCGUUGAAUUGCAUUUUGAAGCAAGUUAUACGCGUAACACAA .(((((.......((((((((((........))))))))))((((((((..............)))...)))))(((((.((((........)))).))).))..))))).... ( -26.64) >DroSim_CAF1 7043 113 - 1 -GUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCUUUCGCCAAUGAUCGUUGAAUUGCAUUUUGCAGCAAGUUAUACGCGUAACACAA -(((((.......((((((((((........))))))))))((((((((..............)))...)))))(((((.((((........)))).))).))..))))).... ( -26.44) >DroEre_CAF1 6231 111 - 1 -UUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAACGUCUUCACGAUCUUUCGCCAAUGAUCGUUCAACUGCAUUUCGAAGAAACUUGU--CCACAACACAA -...........((((((((....))))...(((((((((((((....))))))((((((..........))))))......)))))))....))))....--........... ( -26.50) >DroPer_CAF1 22073 110 - 1 -AGCACUUACUCGUCUGCAUCUCGGUGCACAGGAAUGCAAAGAUCAGUAUCUUCAUGAUCUUGCGAUAAUGAUCGUUCAGCUGCAUGUCGAUCGAUGUU-U--AAGUCGCACAA -.(((((((..(((((((((....)))))..(..((((((((((((.........)))))))(((((....))))).....)))))..)....))))..-)--)))).)).... ( -32.30) >consensus _GUUACUUACUCGUUUGCAUUUCAGUGCAUAGAAAUGCGAAGAUCAGCGUCUUCACAAUCUUUCGCCAAUGAUCGUUCAACUGCAUUUCGAAGCAAGUUAU__ACGUAACACAA ...............(((((....)))))..(((((((((((((....))))))((.(((..........))).))......)))))))......................... (-16.69 = -16.30 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:07 2006