Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,800,438 – 5,800,534 |
Length | 96 |
Max. P | 0.923325 |
Location | 5,800,438 – 5,800,534 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 85.45 |
Mean single sequence MFE | -14.27 |
Consensus MFE | -11.58 |
Energy contribution | -12.25 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.81 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5800438 96 + 22224390 AGACUUAAACCGAUCGAAUCCACACACACACACACACACUGUAAUCCUGGCUUCACAGCAUAAACAAAUUCACCCGAAUACGUGUGAAUUAAAAUA ...............(((.(((.....(((.........))).....))).)))............(((((((.((....)).)))))))...... ( -11.30) >DroSec_CAF1 5988 83 + 1 AUACUUAAAACGA-------------CACACACACACACCGUAAUCCUGGCUUCAUAGCAUAAACAAAUUCGCCGGAAUACGUGUGAAUUAAAAUA .............-------------........(((((.(((.(((.(((....................)))))).)))))))).......... ( -15.75) >DroSim_CAF1 6489 83 + 1 AUACCUAAAACGA-------------CACACACACACACCGUAAUCCUGGCUUCACAGCAUAAACAAAUUCGCCGGAAUACGUGUGAAUUAAAAUA .............-------------........(((((.(((.(((.(((....................)))))).)))))))).......... ( -15.75) >consensus AUACUUAAAACGA_____________CACACACACACACCGUAAUCCUGGCUUCACAGCAUAAACAAAUUCGCCGGAAUACGUGUGAAUUAAAAUA ..................................(((((.(((.(((.(((....................)))))).)))))))).......... (-11.58 = -12.25 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:06 2006