Locus 2133

Sequence ID X_DroMel_CAF1
Location 5,790,829 – 5,790,930
Length 101
Max. P 0.994095
window3464

overview

Window 4

Location 5,790,829 – 5,790,930
Length 101
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -23.58
Consensus MFE -17.06
Energy contribution -17.40
Covariance contribution 0.34
Combinations/Pair 1.11
Mean z-score -2.13
Structure conservation index 0.72
SVM decision value 2.45
SVM RNA-class probability 0.994095
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5790829 101 - 22224390
AUGAAAAAGAAUCGAUAGUACCGUCUAGGUAUCGAAUUCUUACCAAUCUAUCGAUUGUUCUUUGGCGGUAACGAUGGUGAUGUAUAAAGAUUC-------------------CCAACAAA
........(((((.(((.(((((((....(((((.........(((((....)))))........)))))..)))))))...)))...)))))-------------------........ ( -21.53)
>DroSec_CAF1 7028 98 - 1
AUGGAAAAGAAUCGAUAGUACCGUCGAGGUAUCGAAUUCUUACCA---UACAGAUCCACAAUCGUCACUAUCAAUGGUGAUGUAAAAAGAUUC-------------------CCAACAAU
((((..(((((((((...((((.....))))))).)))))).)))---)...((((......((((((((....))))))))......)))).-------------------........ ( -23.50)
>DroSim_CAF1 8217 117 - 1
AUGGAAAAGAAUCGAUAGUACCGUCGAGGUAUCGAAUUCUUACCA---UACUGAUCCACAAUCGUCACUAUCAAUGGUGAUGUAAAAAGAUUCCAAUAGAUUCCAAAAGAUUCCAACAAU
.((((((((((((((...((((.....))))))).))))))....---....((((......((((((((....))))))))......))))........)))))............... ( -25.70)
>consensus
AUGGAAAAGAAUCGAUAGUACCGUCGAGGUAUCGAAUUCUUACCA___UACAGAUCCACAAUCGUCACUAUCAAUGGUGAUGUAAAAAGAUUC___________________CCAACAAU
.(((..(((((((((...((((.....))))))).))))))...........((((......((((((((....))))))))......))))....................)))..... (-17.06 = -17.40 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:01 2006