Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,783,394 – 5,783,484 |
Length | 90 |
Max. P | 0.624802 |
Location | 5,783,394 – 5,783,484 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -19.01 |
Energy contribution | -20.82 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5783394 90 - 22224390 GCUUUUUUUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAGUGCGUCGGUGGUGUGUAAAU ((((((.........)))))).(((((((.(((((((((.(((.((.......))(((.....)))..))).)))))))))))))))).. ( -25.50) >DroSec_CAF1 51085 90 - 1 GCUUUUUGUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAGUGCGUCGGUGGUGUGUAAAU ((((((.(.....).)))))).(((((((.(((((((((.(((.((.......))(((.....)))..))).)))))))))))))))).. ( -27.30) >DroSim_CAF1 42785 90 - 1 GCUUUUUGUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAAUGCGUCGGUGGUGUGUAAAU ((((((.(.....).)))))).(((((((.(((((((((...((((.........(((.....)))))))..)))))))))))))))).. ( -26.00) >DroEre_CAF1 52134 85 - 1 GCUUUUUGUCCUGCCAGCAGCACUA--UAUCCGCCGAUGAACUUGUUAUCCCUAUGAAUCCUUUUCACAGUGCGUCGG---UGUGUAAAU .......((.(((....))).))..--((..((((((((.(((.((.........(((.....)))))))).))))))---))..))... ( -17.70) >consensus GCUUUUUGUCAUGCCAGGAGCAUUAUAUAUCCGCCGAUGAACUUGUUAUCCCUACGAAUCCUUUUCACAGUGCGUCGGUGGUGUGUAAAU ((((((.(.....).)))))).(((((((.(((((((((...((((.........(((.....)))))))..)))))))))))))))).. (-19.01 = -20.82 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:00 2006