Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,781,445 – 5,781,554 |
Length | 109 |
Max. P | 0.611397 |
Location | 5,781,445 – 5,781,554 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -27.25 |
Consensus MFE | -19.96 |
Energy contribution | -20.53 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.84 |
Structure conservation index | 0.73 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5781445 109 - 22224390 AACACGAAAUUGGGUAGAAAAACCGCCGAAGAAAGGACUUCUUUGGCUAG--UACAUAAAAGAAUGCCAUAUGUACCGGUUU-UUUAUGUGCAACCGCCGUUUGAUUGAUAU ....((((....(((.........(((((((((.....)))))))))..(--((((((((((...(((.........)))))-))))))))).)))....))))........ ( -28.90) >DroSec_CAF1 49109 108 - 1 AA--CGAAAUUGGGUAGAAAAACCGCCGAAGAAAGGACUUCUUUGGCUAG--UACAUAAAAGAAUGCCAUAUGUACCGGUUUUUUUAUGUGCAGCCGCCGUUUGAUUGAUAU ((--((.....(.((((((((((((((((((((.....)))))))))..(--((((((...........))))))).))))))))))).)((....)))))).......... ( -30.90) >DroEre_CAF1 50219 106 - 1 AA--CGAAAUUGGGUAGAAAAAACCCCGAAGAAAGGACUUCUUUGGCUAG--UAUAUAAAAGAAUGCCAUAUGUACCGGUUUUUUU-UGUGCUGCUA-UGUUUGAUUGAUAU ..--((((....(((((((((((((((((((((.....))))))))...(--((((((...........))))))).)))))))).-....))))).-..))))........ ( -23.90) >DroYak_CAF1 53561 107 - 1 AA--CGAAAUUGGGUAGAAAAACCCACGAAGAAAGGACUUCUUUGGCUAGUGUAUAUAAAAGAGUGCCAUAUGUACCGGUUUUUUUAUGUGCAACCA---UUUGAUUGAUAU ..--((((..(((((......)))))(((((((.....))))))).....(((((((((((((..(((.........))))))))))))))))....---))))........ ( -25.30) >consensus AA__CGAAAUUGGGUAGAAAAACCCCCGAAGAAAGGACUUCUUUGGCUAG__UACAUAAAAGAAUGCCAUAUGUACCGGUUUUUUUAUGUGCAACCA_CGUUUGAUUGAUAU ....((((....(((.........(((((((((.....))))))))).....(((((((((((..(((.........))))))))))))))..)))....))))........ (-19.96 = -20.53 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:59 2006