Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,779,983 – 5,780,090 |
Length | 107 |
Max. P | 0.997350 |
Location | 5,779,983 – 5,780,090 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -19.34 |
Consensus MFE | -18.72 |
Energy contribution | -18.61 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -1.89 |
Structure conservation index | 0.97 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5779983 107 + 22224390 GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUUCUUUUUU-----UUUUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA (((((.((((.((((......((((((((.........--....................-----.......))))))))...)))).)))).)))))................ ( -19.42) >DroSec_CAF1 47549 104 + 1 GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUUCUUUUU--------UUUUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA (((((.((((.((((......((((((((.........--...((.....)).......--------.....))))))))...)))).)))).)))))................ ( -20.65) >DroSim_CAF1 40000 112 + 1 GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUUCUUUUUUUUUUUUUUUUUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA (((((.((((.((((......((((((((.........--................................))))))))...)))).)))).)))))................ ( -19.28) >DroEre_CAF1 48639 111 + 1 GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUAACAUUCCGUUUUUUUUUUUUUG-UUUGUUGUAUGGAGAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA (((((.((((.((((......((((((((.........--.........................-......))))))))...)))).)))).)))))................ ( -19.00) >DroYak_CAF1 51904 112 + 1 GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU--UUUACAUUCCGUCUUUUUUUUUGUACGUUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA (((((.((((.((((......((((((((.........--...(((...((((.........).))).))).))))))))...)))).)))).)))))................ ( -20.62) >DroAna_CAF1 54135 110 + 1 CAUGACAGGUCCACAUAUAAAUUCCGUAUUCUCCUUUUUUUUUACAUUCCUCUUUUUUUU-U---UUGUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAAGUUGACAUGAAAA .((((.((((.((((......((((((((..............((((.............-.---..)))).))))))))...)))).)))).))))................. ( -17.05) >consensus GAUGACAGGUUCACAUAUAAAUUCCGUACUCUCCUUUU__UUUACAUUCCGUUCUUUUUU_U___UUUUGUUGUAUGGAAAACUGUGUACCUUUCAUUUAACUUGACAUGAAAA (((((.((((.((((......((((((((...........................................))))))))...)))).)))).)))))................ (-18.72 = -18.61 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:58 2006