Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 761,399 – 761,498 |
Length | 99 |
Max. P | 0.946699 |
Location | 761,399 – 761,498 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -34.51 |
Consensus MFE | -15.37 |
Energy contribution | -16.25 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.16 |
Mean z-score | -2.86 |
Structure conservation index | 0.45 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 761399 99 - 22224390 GGC-------AGCUCAAGACGAUUUUAUUUUUGUUUUUCGCUGCCCACUUUCCUCGUCCUCUUGGUCAUGCUCUUGC-CUGGCUAUAUGCCGGGCCAGACGUGGCCG (((-------(((..(((((((........)))))))..))))))..................(((((((.(((.((-(((((.....))))))).)))))))))). ( -45.20) >DroSec_CAF1 76241 107 - 1 GGCAAAAAGCAGCUCAAGACGAUUUCAUUUUUGUUUUUCGCUGCCCACUUUCCUUGUCCUCUUGGUCUUGCUCUUGCUCUGGCUAUAUGCCGGGCCAGACGUGGCCG (((.....(((((..(((((((........)))))))..))))).(((.......(.((....)).)....(((.((.(((((.....))))))).))).)))))). ( -36.00) >DroSim_CAF1 39619 107 - 1 GGCAAAAAGCAGCUCAAGACGAUUUCAUUUUUGUUUUUCGCUGCCCACUUUCCUCGUCCUCUUGGUCUUGCUCUUGCUCUGGCUAUAUGCCGGGCCAGACGUGGCCG (((.....(((((..(((((((........)))))))..))))).(((.......(.((....)).)....(((.((.(((((.....))))))).))).)))))). ( -36.30) >DroEre_CAF1 91509 95 - 1 GGGAAAAAGCUGCUCAAGACGGUUUUAUUUUUGUUUCUCGCUGC-CACUUUGCUCGUCCUCCUGCUCCAGCUCUUUCC-----------CAGAGCCAGACGUGGUCG ((((((.(((((..((.((((((.........((.....))...-......)).))))....))...))))).)))))-----------).((.(((....))))). ( -22.57) >DroYak_CAF1 80584 94 - 1 GGGAAAAAGCUGCUCAAGACGAUUUUAUUUUUGUUU-UCGCUGC-CACUUUCCUCGUCCUCUGGCUCCAGCUCUUUGC-----------CAGAGCCAGACGUGGCCG ((((((..((.((..(((((((........))))))-).)).))-...)))))).((((((((((((..((.....))-----------..)))))))).).))).. ( -32.50) >consensus GGCAAAAAGCAGCUCAAGACGAUUUUAUUUUUGUUUUUCGCUGCCCACUUUCCUCGUCCUCUUGGUCCUGCUCUUGCCCUGGCUAUAUGCCGGGCCAGACGUGGCCG (((.....(((((..(((((((........)))))))..)))))........(.(((((....).....((((..................))))..)))).)))). (-15.37 = -16.25 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006