Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,766,748 – 5,766,853 |
Length | 105 |
Max. P | 0.640519 |
Location | 5,766,748 – 5,766,853 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 91.94 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -20.72 |
Energy contribution | -21.32 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -1.44 |
Structure conservation index | 0.81 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5766748 105 - 22224390 UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGUUUAGAUGGAAUUCCAAUCUGCUGGCGA-ACAAAAGGGUGGAAAUUUACGAAAAGAUUUCCAUAAGUU---- .(..((((......).)))..)......(((((((.....(((((((....)).)))))..)))))-))......((((((((((......)))))))))).....---- ( -26.70) >DroSec_CAF1 39590 105 - 1 UUUGUGCCAUUCUAGAGCAUGAUUUGUAGUUCGUUUCGUUUAGAUGGAAUUCCAAUCUGCUGGCGA-ACAAAAGGGUGGAAAUUUACGAAAAGAUUUCCAUAAGUU---- .(..((((......).)))..)......(((((((.....(((((((....)).)))))..)))))-))......((((((((((......)))))))))).....---- ( -26.70) >DroEre_CAF1 40445 104 - 1 UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGU-UAGAUGGAAUUCCAAUCUGCUGGCAA-ACAAAAGGGUGGAAAUGUACGAAAAGAUUUCCAUAAGUU---- (((((((((.....(((.((((........)))))))..-(((((((....)).))))).))))..-)))))...((((((((.(......).)))))))).....---- ( -23.70) >DroYak_CAF1 42198 104 - 1 UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGU-UAGAUGGAAUUCCAAUCUGCUGGCGA-ACAAAAGGGUGGAAAUGUACGAAAAGAUUUCCAUAAGUU---- .(..((((......).)))..)......(((((((....-(((((((....)).)))))..)))))-))......((((((((.(......).)))))))).....---- ( -25.90) >DroAna_CAF1 44081 107 - 1 UUUUUG-CGUUUUAGAACAUGAUUUGUAUUUCGU-UCGU-UAGAUGGAAUUCCAAUCUGCUGGCAAAACAAAAGGGUGGAAAUUCUCUAAAAGAUUUCCAUAAGGAACGA ....((-((..(((.....)))..))))..((((-((.(-((..((((((((((..((..((......))..))..)))))..(((.....))).)))))))).)))))) ( -24.60) >consensus UUUGUGCCAUUUUAGAGCAUGAUUUGUAGUUCGUUUCGU_UAGAUGGAAUUCCAAUCUGCUGGCGA_ACAAAAGGGUGGAAAUUUACGAAAAGAUUUCCAUAAGUU____ ....(((((.....(((.((((........)))))))...(((((((....)).))))).)))))..........((((((((((......))))))))))......... (-20.72 = -21.32 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:54 2006