Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,761,938 – 5,762,036 |
Length | 98 |
Max. P | 0.739949 |
Location | 5,761,938 – 5,762,036 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -19.72 |
Consensus MFE | -12.28 |
Energy contribution | -12.20 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.13 |
Mean z-score | -2.14 |
Structure conservation index | 0.62 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5761938 98 + 22224390 CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACACCGAAAAUACAACGAAGCGAAAACACGCGUUACGUUGGUAAACAACAUUUACCAGGCUAACAGAU ..((((.((((((.............((((....)))).....((((.((((........)))).))))((((((.....)))))).)))))).)))) ( -24.30) >DroSec_CAF1 34794 87 + 1 CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGGCACCGAAAAUACAACGAAACGAAAACACGCGUUACGUUGGUAAACAACAUUU-----------AGAU (((....(((((((((..........((((....))))........(.((((........)))).)))))))...)))....)-----------)).. ( -14.90) >DroSim_CAF1 35664 87 + 1 CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGGCACCGAAAAUACAACGAAACGAAAACACGCGUUACGUUGGUAAACAACAUUU-----------AGAU (((....(((((((((..........((((....))))........(.((((........)))).)))))))...)))....)-----------)).. ( -14.90) >DroEre_CAF1 35314 90 + 1 CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACUCCGAAAAUAC---GAUGUGCAAACACGCGUUGCGUUGGUAAACAACGUUUGC-----CAACAUUU ..............(((.........((((....))))...((---(.((((....))))))))))((((((((((...))))))-----)))).... ( -21.90) >DroYak_CAF1 37111 94 + 1 UUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACGCCGAAAAUAC---GAAAUGCAAACACGCGUUACGUCGGUAAACAACAUUUGCUAG-CCGACUUAA .......(((((.((((..........((((((.((......)---).(((((......))))).))))))...........)))).)-))))..... ( -22.60) >consensus CUAUCUCUUGGCCAGCAUCCAAAAUAUUCGACACCGAAAAUACAACGAAACGAAAACACGCGUUACGUUGGUAAACAACAUUU_C_______ACAGAU ..........((((((..........((((....))))........(.((((........)))).))))))).......................... (-12.28 = -12.20 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:49 2006