Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,744,465 – 5,744,564 |
Length | 99 |
Max. P | 0.992271 |
Location | 5,744,465 – 5,744,564 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 85.06 |
Mean single sequence MFE | -17.43 |
Consensus MFE | -17.67 |
Energy contribution | -17.30 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.23 |
Mean z-score | -2.11 |
Structure conservation index | 1.01 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5744465 99 - 22224390 CUGCCCCG-----CACCCCUUUCCUUCCACUACCGUUUUGCCGCAUUUGGUAUUGCCAUCUCGCUUUUUUGGCUUUACUUUGCUUUUUGAAUAAGCCAAGAAAC ........-----.....................((..(((((....)))))..))........(((((((((((.................))))))))))). ( -15.83) >DroSec_CAF1 17338 99 - 1 CUGCCCCG-----CACCCCUCUCCAUCCCCUACCGUUUUGCCGCAUUCGGUAUUGCCAUCUCGCUUUUUUGGCUUUAUUUCGCCCUUUGAUUAAGCCAAGAAAC ........-----.....................((..(((((....)))))..))........(((((((((((....(((.....)))..))))))))))). ( -18.80) >DroSim_CAF1 17886 99 - 1 CUGCCCCG-----CACCCCUCUCCAUCCUCUACCGUUUUGCCGCAUUUGGUAUUGCCAUCUCGCUUUUUUGGCUUUAUUUCGCUUUUUGAUUAAGCCAAGAAAC ........-----.....................((..(((((....)))))..))........(((((((((((....(((.....)))..))))))))))). ( -17.50) >DroEre_CAF1 17694 100 - 1 CUCCCCCAUUCCUCCCCCCUCUUCGUCACCAUCCGUUUUGCCGCAUUUGGUAUUGCCAUC----UUUUUUGGCUUUAUUUUGCUUUUCGAGUAAGCCAAAAAAU ..................................((..(((((....)))))..))....----(((((((((((...((((.....)))).))))))))))). ( -17.60) >consensus CUGCCCCG_____CACCCCUCUCCAUCCCCUACCGUUUUGCCGCAUUUGGUAUUGCCAUCUCGCUUUUUUGGCUUUAUUUCGCUUUUUGAUUAAGCCAAGAAAC ..................................((..(((((....)))))..))........(((((((((((...((((.....)))).))))))))))). (-17.67 = -17.30 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:44 2006