Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,742,860 – 5,742,958 |
Length | 98 |
Max. P | 0.937622 |
Location | 5,742,860 – 5,742,958 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.41 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -11.91 |
Energy contribution | -12.13 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.11 |
Mean z-score | -2.49 |
Structure conservation index | 0.52 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5742860 98 + 22224390 ----------------UUGCAACUUGAAGAUAGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUGAAAUGUGAAACAAACAUA--CAUACAUAUGUA----UGUACAUAGUUAUAAAAAU ----------------..(((..(((.((.(((((......))))).)).)))))).((((((.(...(((.......)))((--(((((....)))----)))))))))))........ ( -19.50) >DroEre_CAF1 16070 96 + 1 ----------------UUGCAACUUGAAGAUGGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUGAAAUGCGAAAAAUACAAAUGCAUAUGUACACA--------CAUAGAUACAAAAAU ----------------(((((..(..(((.((((.....((((....))))...)))).)).)..)..)))))..............(((((....)--------))))........... ( -17.60) >DroYak_CAF1 17335 120 + 1 GUAUGUACAUACAUAGUUGCAACUUGAAGAUGGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUAUAAUGCGAAAAAUACAAAUACAUACAUACAUAUGUAUGUAUUUAGAUAUACAAAU ((((((..........(((((...(((((.((((.....((((....))))...)))).)).)))...))))).......((((((((((((....))))))))))))..)))))).... ( -31.50) >consensus ________________UUGCAACUUGAAGAUGGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUGAAAUGCGAAAAAUACAAAU_CAUACAUACAUA____UGUACAUAGAUAUAAAAAU ................(((((..((((((.((((.....((((....))))...)))).)).))))..)))))............................................... (-11.91 = -12.13 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:43 2006