Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,740,735 – 5,740,831 |
Length | 96 |
Max. P | 0.614595 |
Location | 5,740,735 – 5,740,831 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.43 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -13.51 |
Energy contribution | -15.40 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.05 |
Mean z-score | -3.00 |
Structure conservation index | 0.49 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5740735 96 + 22224390 AGCCAGAGUUAUUUUUGGAGUCUUACAGAACUUGGCCGAAAAACGGCUAGCAAAGUAUGCAUAUGUAUGUUCCAAAGAUUUUUCUU------------UAUUAAGUUG ....((((..((((((((((.(.((((.....((((((.....))))))(((.....)))...)))).)))))))))))..)))).------------.......... ( -26.90) >DroSec_CAF1 13728 99 + 1 AG-AAGAGUUAUUUUUGGAGUCUUACAGAACUGAGCCGAAAAUCGGCCAGCAAAUUAUGCGAAAGUA--------AGAUUUUUCUUUGAACUCAAAGUUAUUAGGUUG ..-..(((((......((((((((((.....((.((((.....))))))(((.....)))....)))--------)))))))......)))))............... ( -26.90) >DroSim_CAF1 14296 100 + 1 AGCCAGAGUUAUUUUUGGAGUCUUACAGAACUCAGCCGAAAAACGGCUAGCAAAUUAUGCAAAAGUA--------AGAUUUUUCUUUGAACUCAAAGUUAUUCGGUUG ((((.(((((......((((((((((.......(((((.....))))).(((.....)))....)))--------)))))))......)))))...(.....))))). ( -28.30) >consensus AGCCAGAGUUAUUUUUGGAGUCUUACAGAACUCAGCCGAAAAACGGCUAGCAAAUUAUGCAAAAGUA________AGAUUUUUCUUUGAACUCAAAGUUAUUAGGUUG .....(((((......(((((((..........(((((.....))))).(((.....)))...............)))))))......)))))............... (-13.51 = -15.40 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:42 2006