Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 760,771 – 760,864 |
Length | 93 |
Max. P | 0.538581 |
Location | 760,771 – 760,864 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.87 |
Mean single sequence MFE | -23.25 |
Consensus MFE | -19.00 |
Energy contribution | -19.60 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.82 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 760771 93 + 22224390 AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA--------------GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG ...(((((.......)))))..............(((((.--------------((((((.(((....((((.........))))....))).).)))))..))))) ( -23.20) >DroSec_CAF1 75584 93 + 1 AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA--------------GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG ...(((((.......)))))..............(((((.--------------((((((.(((....((((.........))))....))).).)))))..))))) ( -23.20) >DroSim_CAF1 38952 93 + 1 AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA--------------GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG ...(((((.......)))))..............(((((.--------------((((((.(((....((((.........))))....))).).)))))..))))) ( -23.20) >DroEre_CAF1 90753 93 + 1 AACGAUAUCUGCAAUAUAUCCCCACUGCGAGCUCCCCCAA--------------GCUCCCUGCCAGUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG ...(((((.......)))))...((((((((((......)--------------))))...).)))).........((((((.((((((.....)))))).)))))) ( -25.20) >DroYak_CAF1 79781 107 + 1 CACGAUAUCUACAAUAUAUCCCCACUGCGAGAUCCCCGAACCACCCCGCUCCCUGCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUCGG ..(((.....................(((.................)))....(((((((.(((....((((.........))))....))).).))))))..))). ( -21.43) >consensus AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA______________GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG ...(((((.......)))))((((...((.......))................((((((.(((....((((.........))))....))).).)))))...)))) (-19.00 = -19.60 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:06 2006